RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 KIR2DL5BA0A0G2JPC4 375 aa16.8■□□□□ 0.28
CPSF4-204ENST00000436336 ANXA2RQ3ZCQ2 193 aa16.8■□□□□ 0.28
CPSF4-204ENST00000436336 MUC21Q5SSG8 566 aa16.8■□□□□ 0.28
CPSF4-204ENST00000436336 KIR2DL5AQ8N109 375 aa16.8■□□□□ 0.28
CPSF4-204ENST00000436336 KIR2DL5BQ8NHK3 375 aa16.8■□□□□ 0.28
CPSF4-204ENST00000436336 KCNS1Q96KK3 526 aa16.8■□□□□ 0.28
CPSF4-204ENST00000436336 SMCO4Q9NRQ5 59 aa16.8■□□□□ 0.28
CPSF4-204ENST00000436336 DNAH3Q8TD57 4116 aa16.8■□□□□ 0.28
CPSF4-204ENST00000436336 APOC4P55056 127 aa16.79■□□□□ 0.28
CPSF4-204ENST00000436336 TMEM88Q6PEY1 159 aa16.79■□□□□ 0.28
CPSF4-204ENST00000436336 GFRA4Q9GZZ7 299 aa16.79■□□□□ 0.28
CPSF4-204ENST00000436336 SMIM27A0A1W2PRY6 76 aa16.79■□□□□ 0.28
CPSF4-204ENST00000436336 TDRG1Q3Y452 100 aa16.79■□□□□ 0.28
CPSF4-204ENST00000436336 ZNF575Q86XF7 245 aa16.79■□□□□ 0.28
CPSF4-204ENST00000436336 CBLN2Q8IUK8 224 aa16.79■□□□□ 0.28
CPSF4-204ENST00000436336 TMEM256Q8N2U0 113 aa16.79■□□□□ 0.28
CPSF4-204ENST00000436336 IGHV1OR15-1A0A075B7D0 117 aa16.78■□□□□ 0.28
CPSF4-204ENST00000436336 FAM231BA6NCW3 169 aa16.78■□□□□ 0.28
CPSF4-204ENST00000436336 CXCL1P09341 107 aa16.78■□□□□ 0.28
CPSF4-204ENST00000436336 KCNIP4Q6PIL6 250 aa16.78■□□□□ 0.28
CPSF4-204ENST00000436336 PYGO2Q9BRQ0 406 aa16.78■□□□□ 0.28
CPSF4-204ENST00000436336 GZMBP10144 247 aa16.77■□□□□ 0.28
CPSF4-204ENST00000436336 S100PP25815 95 aa16.77■□□□□ 0.28
CPSF4-204ENST00000436336 C1orf158Q8N1D5 194 aa16.77■□□□□ 0.28
CPSF4-204ENST00000436336 CSNK1G2-AS1Q8NCQ2 148 aa16.77■□□□□ 0.28
CPSF4-204ENST00000436336 NEU1Q99519 415 aa16.77■□□□□ 0.28
CPSF4-204ENST00000436336 LINC00467Q9BRT7 94 aa16.76■□□□□ 0.27
CPSF4-204ENST00000436336 GRIFINA4D1Z8 144 aa16.76■□□□□ 0.27
CPSF4-204ENST00000436336 GTSF1Q8WW33 167 aa16.76■□□□□ 0.27
CPSF4-204ENST00000436336 LINC01587Q99440 93 aa16.76■□□□□ 0.27
CPSF4-204ENST00000436336 TMEM208Q9BTX3 173 aa16.76■□□□□ 0.27
CPSF4-204ENST00000436336 NAT8BQ9UHF3 227 aa16.76■□□□□ 0.27
CPSF4-204ENST00000436336 GOLT1BQ9Y3E0 138 aa16.76■□□□□ 0.27
CPSF4-204ENST00000436336 TYMSP04818 313 aa16.75■□□□□ 0.27
CPSF4-204ENST00000436336 FOXA3P55318 350 aaPredicted RBP16.75■□□□□ 0.27
CPSF4-204ENST00000436336 TCL1AP56279 114 aa16.75■□□□□ 0.27
CPSF4-204ENST00000436336 URGCP-MRPS24S4R325 110 aa16.75■□□□□ 0.27
CPSF4-204ENST00000436336 DNHD1Q96M86 4753 aa16.74■□□□□ 0.27
CPSF4-204ENST00000436336 HIGD1CA8MV81 97 aa16.74■□□□□ 0.27
CPSF4-204ENST00000436336 FAM3BP58499 235 aaPredicted RBP16.74■□□□□ 0.27
CPSF4-204ENST00000436336 DNLZQ5SXM8 178 aa16.74■□□□□ 0.27
CPSF4-204ENST00000436336 UBE2CO00762 179 aa16.73■□□□□ 0.27
CPSF4-204ENST00000436336 GNRH2O43555 120 aa16.73■□□□□ 0.27
CPSF4-204ENST00000436336 A0A1W2PPQ1 181 aa16.73■□□□□ 0.27
CPSF4-204ENST00000436336 IGLC6P0CF74 106 aa16.73■□□□□ 0.27
CPSF4-204ENST00000436336 ASIPP42127 132 aa16.73■□□□□ 0.27
CPSF4-204ENST00000436336 ELOBQ15370 118 aa16.73■□□□□ 0.27
CPSF4-204ENST00000436336 NUP35Q8NFH5 326 aa16.73■□□□□ 0.27
CPSF4-204ENST00000436336 MGAM2Q2M2H8 2515 aa16.72■□□□□ 0.27
CPSF4-204ENST00000436336 CBY3A6NI87 242 aa16.72■□□□□ 0.27
CPSF4-204ENST00000436336 FER1L6-AS1Q8NA97 138 aa16.72■□□□□ 0.27
CPSF4-204ENST00000436336 TRGV11A0A075B6L2 103 aa16.71■□□□□ 0.27
CPSF4-204ENST00000436336 TRAV9-1A0A075B6T8 112 aa16.71■□□□□ 0.27
CPSF4-204ENST00000436336 IGHV3OR16-12A0A075B7B8 117 aa16.71■□□□□ 0.27
CPSF4-204ENST00000436336 ZNF705AQ6ZN79 300 aaPredicted RBP16.71■□□□□ 0.27
CPSF4-204ENST00000436336 YPEL4Q96NS1 127 aa16.71■□□□□ 0.27
CPSF4-204ENST00000436336 TP53TG3Q9ULZ0 132 aa16.71■□□□□ 0.27
CPSF4-204ENST00000436336 HTN1P15515 57 aa16.7■□□□□ 0.26
CPSF4-204ENST00000436336 S100A4P26447 101 aaKnown RBP16.7■□□□□ 0.26
CPSF4-204ENST00000436336 PRB2P02812 416 aaPredicted RBP16.7■□□□□ 0.26
CPSF4-204ENST00000436336 FRMD6-AS1P0C7T7 363 aa16.7■□□□□ 0.26
CPSF4-204ENST00000436336 MED14OSP0DP75 135 aa16.7■□□□□ 0.26
CPSF4-204ENST00000436336 BTF3L4Q96K17 158 aa16.7■□□□□ 0.26
CPSF4-204ENST00000436336 PGLYRP4Q96LB8 373 aa16.7■□□□□ 0.26
CPSF4-204ENST00000436336 TPPP3Q9BW30 176 aa16.7■□□□□ 0.26
CPSF4-204ENST00000436336 NOTCH1P46531 2555 aa16.69■□□□□ 0.26
CPSF4-204ENST00000436336 IGHV3-16A0A0C4DH30 117 aa16.69■□□□□ 0.26
CPSF4-204ENST00000436336 K7EIL1 84 aa16.69■□□□□ 0.26
CPSF4-204ENST00000436336 SSBP4Q9BWG4 385 aaPredicted RBP16.69■□□□□ 0.26
CPSF4-204ENST00000436336 F2Z2F3 143 aa16.68■□□□□ 0.26
CPSF4-204ENST00000436336 H3BVH4 76 aa16.68■□□□□ 0.26
CPSF4-204ENST00000436336 SNAI2O43623 268 aa16.68■□□□□ 0.26
CPSF4-204ENST00000436336 OR5AL1P0C617 328 aa16.68■□□□□ 0.26
CPSF4-204ENST00000436336 ARMS2P0C7Q2 107 aa16.68■□□□□ 0.26
CPSF4-204ENST00000436336 RNASE3P12724 160 aaKnown RBP16.68■□□□□ 0.26
CPSF4-204ENST00000436336 CTRLP40313 264 aa16.68■□□□□ 0.26
CPSF4-204ENST00000436336 LYZL1Q6UWQ5 148 aa16.68■□□□□ 0.26
CPSF4-204ENST00000436336 TRBV24-1A0A075B6N3 115 aa16.67■□□□□ 0.26
CPSF4-204ENST00000436336 Q6ZWC4 215 aa16.67■□□□□ 0.26
CPSF4-204ENST00000436336 NBEAL1Q6ZS30 2694 aa16.67■□□□□ 0.26
CPSF4-204ENST00000436336 DEFB135Q30KP9 77 aa16.67■□□□□ 0.26
CPSF4-204ENST00000436336 BORCS7Q96B45 105 aa16.67■□□□□ 0.26
CPSF4-204ENST00000436336 MDFICQ9P1T7 246 aa16.67■□□□□ 0.26
CPSF4-204ENST00000436336 TGIF2-C20orf24A0A0A6YYL0 155 aa16.66■□□□□ 0.26
CPSF4-204ENST00000436336 PRM2P04554 102 aa16.66■□□□□ 0.26
CPSF4-204ENST00000436336 SCRT2Q9NQ03 307 aa16.66■□□□□ 0.26
CPSF4-204ENST00000436336 SPINK4O60575 86 aa16.65■□□□□ 0.26
CPSF4-204ENST00000436336 ZNF415Q09FC8 603 aa16.65■□□□□ 0.26
CPSF4-204ENST00000436336 C9orf85Q96MD7 179 aa16.65■□□□□ 0.26
CPSF4-204ENST00000436336 RCHY1Q96PM5 261 aa16.65■□□□□ 0.26
CPSF4-204ENST00000436336 A0A1B0GUT8 65 aa16.65■□□□□ 0.26
CPSF4-204ENST00000436336 ATP5L2Q7Z4Y8 100 aa16.65■□□□□ 0.26
CPSF4-204ENST00000436336 TMEM263Q8WUH6 116 aaKnown RBP16.65■□□□□ 0.26
CPSF4-204ENST00000436336 CNFNQ9BYD5 112 aa16.65■□□□□ 0.26
CPSF4-204ENST00000436336 TIMM8BQ9Y5J9 83 aaPredicted RBP16.65■□□□□ 0.26
CPSF4-204ENST00000436336 MUC4Q99102 2169 aa16.64■□□□□ 0.25
CPSF4-204ENST00000436336 COLCA2A8K830 154 aa16.64■□□□□ 0.25
CPSF4-204ENST00000436336 AZU1P20160 251 aa16.64■□□□□ 0.25
CPSF4-204ENST00000436336 RRN3P1Q2M238 152 aa16.64■□□□□ 0.25
CPSF4-204ENST00000436336 MRPL54Q6P161 138 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 144.2 ms