RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 GAGE12JA6NER3 117 aa11.18□□□□□ -0.62
RTF1-201ENST00000389629 GAGE7O76087 117 aa11.18□□□□□ -0.62
RTF1-201ENST00000389629 GAGE12FP0CL80 117 aa11.18□□□□□ -0.62
RTF1-201ENST00000389629 GAGE12GP0CL81 117 aa11.18□□□□□ -0.62
RTF1-201ENST00000389629 GAGE12IP0CL82 117 aa11.18□□□□□ -0.62
RTF1-201ENST00000389629 FOXI1Q12951 378 aa11.18□□□□□ -0.62
RTF1-201ENST00000389629 GAGE4Q13068 117 aa11.18□□□□□ -0.62
RTF1-201ENST00000389629 VWC2LB2RUY7 222 aa11.17□□□□□ -0.62
RTF1-201ENST00000389629 SMIM20Q8N5G0 67 aa11.17□□□□□ -0.62
RTF1-201ENST00000389629 EXPH5Q8NEV8 1989 aa11.17□□□□□ -0.62
RTF1-201ENST00000389629 COL5A1P20908 1838 aaPredicted RBP11.17□□□□□ -0.62
RTF1-201ENST00000389629 I3L2K1 104 aa11.17□□□□□ -0.62
RTF1-201ENST00000389629 OVOL1O14753 267 aa11.17□□□□□ -0.62
RTF1-201ENST00000389629 SEM1Q6ZVN7 128 aa11.17□□□□□ -0.62
RTF1-201ENST00000389629 HIGD1BQ9P298 99 aa11.17□□□□□ -0.62
RTF1-201ENST00000389629 H3BMM0 161 aa11.16□□□□□ -0.62
RTF1-201ENST00000389629 UBE2WQ96B02 151 aa11.16□□□□□ -0.62
RTF1-201ENST00000389629 PRRC2CQ9Y520 2896 aaKnown RBP11.16□□□□□ -0.62
RTF1-201ENST00000389629 IGKV2D-26A0A0A0MRZ7 120 aa11.16□□□□□ -0.62
RTF1-201ENST00000389629 K7EIM0 57 aa11.16□□□□□ -0.62
RTF1-201ENST00000389629 PLEKHB2Q96CS7 222 aa11.16□□□□□ -0.62
RTF1-201ENST00000389629 FOXE3Q13461 319 aa11.16□□□□□ -0.62
RTF1-201ENST00000389629 INS-IGF2F8WCM5 200 aa11.15□□□□□ -0.62
RTF1-201ENST00000389629 PMVKQ15126 192 aa11.15□□□□□ -0.62
RTF1-201ENST00000389629 CLUHP3Q96NS8 147 aa11.15□□□□□ -0.62
RTF1-201ENST00000389629 FCN3O75636 299 aa11.15□□□□□ -0.62
RTF1-201ENST00000389629 DYNLRB2Q8TF09 96 aa11.15□□□□□ -0.62
RTF1-201ENST00000389629 ADARB2-AS1A8MUL3 147 aa11.15□□□□□ -0.62
RTF1-201ENST00000389629 UBE2L6O14933 153 aa11.15□□□□□ -0.62
RTF1-201ENST00000389629 THBDP07204 575 aa11.15□□□□□ -0.62
RTF1-201ENST00000389629 C9orf139Q6ZV77 190 aa11.15□□□□□ -0.62
RTF1-201ENST00000389629 TRBV7-9A0A0J9YWB2 115 aa11.15□□□□□ -0.63
RTF1-201ENST00000389629 URB1-AS1Q96HZ7 61 aa11.15□□□□□ -0.63
RTF1-201ENST00000389629 AGPAT4-IT1Q9H0P7 198 aa11.15□□□□□ -0.63
RTF1-201ENST00000389629 PRSS47A8MTI9 375 aa11.14□□□□□ -0.63
RTF1-201ENST00000389629 C8orf31Q8N9H6 132 aa11.14□□□□□ -0.63
RTF1-201ENST00000389629 C15orf53Q8NAA6 179 aa11.14□□□□□ -0.63
RTF1-201ENST00000389629 COPS9Q8WXC6 57 aa11.14□□□□□ -0.63
RTF1-201ENST00000389629 LINC00477Q96M19 166 aa11.14□□□□□ -0.63
RTF1-201ENST00000389629 G3V318 75 aa11.14□□□□□ -0.63
RTF1-201ENST00000389629 ZNF625Q96I27 306 aaPredicted RBP11.14□□□□□ -0.63
RTF1-201ENST00000389629 KAAG1Q9UBP8 84 aa11.14□□□□□ -0.63
RTF1-201ENST00000389629 ANKHD1Q8IWZ3 2542 aaKnown RBP11.14□□□□□ -0.63
RTF1-201ENST00000389629 DUX3Q96PT4 197 aa11.14□□□□□ -0.63
RTF1-201ENST00000389629 SPANXB1Q9NS25 103 aaPredicted RBP11.14□□□□□ -0.63
RTF1-201ENST00000389629 TIMM21Q9BVV7 248 aa11.13□□□□□ -0.63
RTF1-201ENST00000389629 CRYGCP07315 174 aa11.13□□□□□ -0.63
RTF1-201ENST00000389629 PLA2G2CQ5R387 149 aa11.13□□□□□ -0.63
RTF1-201ENST00000389629 RPL39LQ96EH5 51 aaKnown RBP11.13□□□□□ -0.63
RTF1-201ENST00000389629 EDA2RQ9HAV5 297 aa11.13□□□□□ -0.63
RTF1-201ENST00000389629 J3QQQ9 107 aa11.13□□□□□ -0.63
RTF1-201ENST00000389629 PRR30Q53SZ7 412 aaPredicted RBP11.13□□□□□ -0.63
RTF1-201ENST00000389629 TEN1Q86WV5 123 aa11.13□□□□□ -0.63
RTF1-201ENST00000389629 YAE1D1Q9NRH1 226 aa11.13□□□□□ -0.63
RTF1-201ENST00000389629 SDHAF1A6NFY7 115 aa11.13□□□□□ -0.63
RTF1-201ENST00000389629 TEX22C9J3V5 150 aa11.13□□□□□ -0.63
RTF1-201ENST00000389629 MT-ATP8P03928 68 aa11.13□□□□□ -0.63
RTF1-201ENST00000389629 DUX5Q96PT3 197 aa11.13□□□□□ -0.63
RTF1-201ENST00000389629 TECTAO75443 2155 aa11.12□□□□□ -0.63
RTF1-201ENST00000389629 C9orf153Q5TBE3 101 aa11.12□□□□□ -0.63
RTF1-201ENST00000389629 RNF183Q96D59 192 aa11.12□□□□□ -0.63
RTF1-201ENST00000389629 M0R1W7 72 aa11.12□□□□□ -0.63
RTF1-201ENST00000389629 C3orf56Q8N813 242 aa11.12□□□□□ -0.63
RTF1-201ENST00000389629 SHISA9B4DS77 424 aa11.12□□□□□ -0.63
RTF1-201ENST00000389629 TRAV41A0A0B4J266 112 aa11.12□□□□□ -0.63
RTF1-201ENST00000389629 ATP6V0E1O15342 81 aa11.12□□□□□ -0.63
RTF1-201ENST00000389629 PRAC2D3DTV9 90 aa11.11□□□□□ -0.63
RTF1-201ENST00000389629 MINOS1Q5TGZ0 78 aa11.11□□□□□ -0.63
RTF1-201ENST00000389629 MINOS1-NBL1R4GNA1 71 aa11.11□□□□□ -0.63
RTF1-201ENST00000389629 ANKRD29Q8N6D5 301 aa11.11□□□□□ -0.63
RTF1-201ENST00000389629 NACAE9PAV3 2078 aa11.1□□□□□ -0.63
RTF1-201ENST00000389629 RANBP2P49792 3224 aaKnown RBP11.1□□□□□ -0.63
RTF1-201ENST00000389629 TMEM101Q96IK0 257 aa11.1□□□□□ -0.63
RTF1-201ENST00000389629 OOSP1A8MZH6 123 aa11.1□□□□□ -0.63
RTF1-201ENST00000389629 IGFL2Q6UWQ7 119 aa11.1□□□□□ -0.63
RTF1-201ENST00000389629 UNC80Q8N2C7 3258 aa11.1□□□□□ -0.63
RTF1-201ENST00000389629 E9PLD3 99 aa11.1□□□□□ -0.63
RTF1-201ENST00000389629 CFC1BP0CG36 223 aa11.1□□□□□ -0.63
RTF1-201ENST00000389629 CFC1P0CG37 223 aa11.1□□□□□ -0.63
RTF1-201ENST00000389629 IGFL3Q6UXB1 125 aa11.1□□□□□ -0.63
RTF1-201ENST00000389629 CITED1Q99966 193 aa11.1□□□□□ -0.63
RTF1-201ENST00000389629 PIEZO2Q9H5I5 2752 aa11.09□□□□□ -0.63
RTF1-201ENST00000389629 MYCNOSP40205 109 aa11.09□□□□□ -0.63
RTF1-201ENST00000389629 ZNF493Q6ZR52 646 aa11.09□□□□□ -0.63
RTF1-201ENST00000389629 ZNF80P51504 273 aaPredicted RBP11.09□□□□□ -0.63
RTF1-201ENST00000389629 C22orf34Q6ZV56 151 aa11.09□□□□□ -0.63
RTF1-201ENST00000389629 DUSP14O95147 198 aaKnown RBP11.09□□□□□ -0.63
RTF1-201ENST00000389629 LINC00574Q9H8X3 128 aa11.09□□□□□ -0.63
RTF1-201ENST00000389629 TRBV7-1A0A0A6YYK4 115 aa11.08□□□□□ -0.64
RTF1-201ENST00000389629 GNRH2O43555 120 aa11.08□□□□□ -0.64
RTF1-201ENST00000389629 INSL3P51460 131 aa11.08□□□□□ -0.64
RTF1-201ENST00000389629 GAGE2AQ6NT46 116 aa11.08□□□□□ -0.64
RTF1-201ENST00000389629 MAPKAPK5-AS1Q8N8E1 139 aa11.08□□□□□ -0.64
RTF1-201ENST00000389629 WNK1Q9H4A3 2382 aa11.08□□□□□ -0.64
RTF1-201ENST00000389629 ZFP2Q6ZN57 461 aa11.08□□□□□ -0.64
RTF1-201ENST00000389629 F6UB75 175 aa11.08□□□□□ -0.64
RTF1-201ENST00000389629 SAA4P35542 130 aa11.08□□□□□ -0.64
RTF1-201ENST00000389629 LINC01587Q99440 93 aa11.08□□□□□ -0.64
RTF1-201ENST00000389629 RHPN1-AS1Q9BWJ2 59 aa11.08□□□□□ -0.64
RTF1-201ENST00000389629 A4D1N5 150 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 283.9 ms