RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 AJUBAQ96IF1 538 aa12.5□□□□□ -0.41
SDC4-201ENST00000372733 GTSF1LQ9H1H1 148 aa12.5□□□□□ -0.41
SDC4-201ENST00000372733 TRBV7-3A0A075B6L6 115 aa12.49□□□□□ -0.41
SDC4-201ENST00000372733 M0R381 172 aa12.49□□□□□ -0.41
SDC4-201ENST00000372733 TAL2Q16559 108 aa12.49□□□□□ -0.41
SDC4-201ENST00000372733 SAMD13Q5VXD3 122 aa12.49□□□□□ -0.41
SDC4-201ENST00000372733 MRPL53Q96EL3 112 aaKnown RBP12.49□□□□□ -0.41
SDC4-201ENST00000372733 C16orf92Q96LL3 132 aa12.49□□□□□ -0.41
SDC4-201ENST00000372733 H7C1H1 209 aa12.49□□□□□ -0.41
SDC4-201ENST00000372733 SH2D6Q7Z4S9 175 aa12.49□□□□□ -0.41
SDC4-201ENST00000372733 EEF1AKMT3Q96AZ1 226 aa12.49□□□□□ -0.41
SDC4-201ENST00000372733 RPL39LQ96EH5 51 aaKnown RBP12.49□□□□□ -0.41
SDC4-201ENST00000372733 C20orf173Q96LM9 149 aa12.49□□□□□ -0.41
SDC4-201ENST00000372733 TSSC4Q9Y5U2 329 aaPredicted RBP12.49□□□□□ -0.41
SDC4-201ENST00000372733 OR11H12B2RN74 326 aa12.48□□□□□ -0.41
SDC4-201ENST00000372733 SAA4P35542 130 aa12.48□□□□□ -0.41
SDC4-201ENST00000372733 DEFB1P60022 68 aa12.48□□□□□ -0.41
SDC4-201ENST00000372733 LCNL1Q6ZST4 164 aa12.48□□□□□ -0.41
SDC4-201ENST00000372733 OR11H1Q8NG94 326 aa12.48□□□□□ -0.41
SDC4-201ENST00000372733 OR11H2Q8NH07 326 aa12.48□□□□□ -0.41
SDC4-201ENST00000372733 MRAP2Q96G30 205 aa12.48□□□□□ -0.41
SDC4-201ENST00000372733 SCGB3A1Q96QR1 104 aa12.48□□□□□ -0.41
SDC4-201ENST00000372733 CHTOPQ9Y3Y2 248 aaKnown RBP12.48□□□□□ -0.41
SDC4-201ENST00000372733 RRN3P1Q2M238 152 aa12.47□□□□□ -0.41
SDC4-201ENST00000372733 ETDBQ3ZM63 59 aa12.47□□□□□ -0.41
SDC4-201ENST00000372733 RASL10AQ92737 203 aa12.47□□□□□ -0.41
SDC4-201ENST00000372733 TRAV12-1A0A0B4J245 112 aa12.47□□□□□ -0.41
SDC4-201ENST00000372733 AZU1P20160 251 aa12.47□□□□□ -0.41
SDC4-201ENST00000372733 HIF1ANQ9NWT6 349 aa12.47□□□□□ -0.41
SDC4-201ENST00000372733 MYMXA0A1B0GTQ4 84 aa12.46□□□□□ -0.41
SDC4-201ENST00000372733 F8W1H4 67 aa12.46□□□□□ -0.41
SDC4-201ENST00000372733 SUMO2P61956 95 aaKnown RBP12.46□□□□□ -0.41
SDC4-201ENST00000372733 KLK9Q2XQG4 91 aa12.46□□□□□ -0.41
SDC4-201ENST00000372733 KLK9Q9UKQ9 250 aa12.46□□□□□ -0.41
SDC4-201ENST00000372733 CYSLTR1Q9Y271 337 aa12.46□□□□□ -0.41
SDC4-201ENST00000372733 U3KQE9 123 aa12.46□□□□□ -0.41
SDC4-201ENST00000372733 ADORA2A-AS1P86434 159 aa12.46□□□□□ -0.42
SDC4-201ENST00000372733 SMAGPQ0VAQ4 97 aa12.46□□□□□ -0.42
SDC4-201ENST00000372733 LINC00527Q9UJ94 153 aa12.46□□□□□ -0.42
SDC4-201ENST00000372733 C14orf178Q8N769 122 aaPredicted RBP12.45□□□□□ -0.42
SDC4-201ENST00000372733 TOMM6Q96B49 74 aa12.45□□□□□ -0.42
SDC4-201ENST00000372733 TRBV7-1A0A0A6YYK4 115 aa12.45□□□□□ -0.42
SDC4-201ENST00000372733 K7ENP7 123 aa12.45□□□□□ -0.42
SDC4-201ENST00000372733 MGPP08493 103 aa12.45□□□□□ -0.42
SDC4-201ENST00000372733 ORMDL2Q53FV1 153 aa12.45□□□□□ -0.42
SDC4-201ENST00000372733 NEXN-AS1Q8NBZ9 246 aa12.45□□□□□ -0.42
SDC4-201ENST00000372733 LGALS1P09382 135 aaKnown RBP12.44□□□□□ -0.42
SDC4-201ENST00000372733 UBE2E1P51965 193 aa12.44□□□□□ -0.42
SDC4-201ENST00000372733 TMEM219Q86XT9 240 aa12.44□□□□□ -0.42
SDC4-201ENST00000372733 ZFAND2AQ8N6M9 145 aa12.44□□□□□ -0.42
SDC4-201ENST00000372733 IGF2RP11717 2491 aa12.44□□□□□ -0.42
SDC4-201ENST00000372733 FOXC1Q12948 553 aa12.44□□□□□ -0.42
SDC4-201ENST00000372733 GLMPQ8WWB7 406 aa12.44□□□□□ -0.42
SDC4-201ENST00000372733 ITLN2Q8WWU7 325 aaPredicted RBP12.44□□□□□ -0.42
SDC4-201ENST00000372733 BAALCQ8WXS3 180 aa12.44□□□□□ -0.42
SDC4-201ENST00000372733 SPTBN1Q01082 2364 aaKnown RBP12.44□□□□□ -0.42
SDC4-201ENST00000372733 A0A1W2PPR1 153 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 GAGE12HA6NDE8 117 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 RNF223E7ERA6 249 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 S100A4P26447 101 aaKnown RBP12.43□□□□□ -0.42
SDC4-201ENST00000372733 ATP5G2Q06055 141 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 GAGE13Q4V321 117 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 C9orf139Q6ZV77 190 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 SPAG8Q99932 426 aaPredicted RBP12.43□□□□□ -0.42
SDC4-201ENST00000372733 PRADC1Q9BSG0 188 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 PRO0461Q9UI25 63 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 RAXQ9Y2V3 346 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 SPTBN4Q9H254 2564 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 CENPVL3A0A0U1RRI6 287 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 A0A1B0GWB2 263 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 MORN3Q6PF18 240 aaPredicted RBP12.43□□□□□ -0.42
SDC4-201ENST00000372733 C2orf66Q6UXQ4 117 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 SIGMAR1Q99720 223 aa12.43□□□□□ -0.42
SDC4-201ENST00000372733 INSL3P51460 131 aa12.42□□□□□ -0.42
SDC4-201ENST00000372733 CD300EQ496F6 205 aaPredicted RBP12.42□□□□□ -0.42
SDC4-201ENST00000372733 GPHB5Q86YW7 130 aa12.42□□□□□ -0.42
SDC4-201ENST00000372733 DPH3P1Q9H4G8 78 aa12.42□□□□□ -0.42
SDC4-201ENST00000372733 SLC25A16P16260 332 aa12.42□□□□□ -0.42
SDC4-201ENST00000372733 UNQ9165/PRO28630Q6UXU0 137 aa12.42□□□□□ -0.42
SDC4-201ENST00000372733 C5orf56Q8N8D9 126 aa12.42□□□□□ -0.42
SDC4-201ENST00000372733 PHLDA3Q9Y5J5 127 aa12.42□□□□□ -0.42
SDC4-201ENST00000372733 LINC01619G3V211 115 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 TRBV12-3P01733 135 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 ANXA2RQ3ZCQ2 193 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 PRSS29PA6NIE9 313 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 ASIPP42127 132 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 SCGB2A2Q13296 93 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 DEFB104AQ8WTQ1 72 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 PLEKHB2Q96CS7 222 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 C20orf78Q9BR46 151 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 PGPEP1Q9NXJ5 209 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 ATRXP46100 2492 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 ZFHX3Q15911 3703 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 ZNF815PA8K554 130 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 J3QR89 54 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 SPOCK3Q9BQ16 436 aa12.41□□□□□ -0.42
SDC4-201ENST00000372733 TRAV21A0A0B4J279 112 aa12.4□□□□□ -0.42
SDC4-201ENST00000372733 F6UB75 175 aa12.4□□□□□ -0.42
SDC4-201ENST00000372733 LENEPQ9Y5L5 61 aa12.4□□□□□ -0.42
SDC4-201ENST00000372733 IGHV3OR16-10A0A075B7F0 116 aa12.4□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms