RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 AMBPP02760 352 aa9.98□□□□□ -0.81
HMGB1-202ENST00000339872 DEFB131AP59861 70 aa9.98□□□□□ -0.81
HMGB1-202ENST00000339872 KRTAP10-3P60369 221 aa9.98□□□□□ -0.81
HMGB1-202ENST00000339872 LINC00518Q8N0U6 118 aa9.98□□□□□ -0.81
HMGB1-202ENST00000339872 GATD1Q8NB37 220 aa9.98□□□□□ -0.81
HMGB1-202ENST00000339872 OR10D4PQ8NGN7 298 aa9.98□□□□□ -0.81
HMGB1-202ENST00000339872 ALKBH7Q9BT30 221 aaPredicted RBP9.98□□□□□ -0.81
HMGB1-202ENST00000339872 AGRNO00468 2067 aa9.97□□□□□ -0.81
HMGB1-202ENST00000339872 LOC102724200A0A096LPH7 203 aaPredicted RBP9.97□□□□□ -0.81
HMGB1-202ENST00000339872 DUSP14O95147 198 aaKnown RBP9.97□□□□□ -0.81
HMGB1-202ENST00000339872 NTF3P20783 257 aa9.97□□□□□ -0.81
HMGB1-202ENST00000339872 LEPP41159 167 aa9.97□□□□□ -0.81
HMGB1-202ENST00000339872 LINC00310P59036 64 aa9.97□□□□□ -0.81
HMGB1-202ENST00000339872 C18orf32Q8TCD1 76 aa9.97□□□□□ -0.81
HMGB1-202ENST00000339872 PACRGQ96M98 296 aaPredicted RBP9.97□□□□□ -0.81
HMGB1-202ENST00000339872 ODF3Q96PU9 254 aa9.97□□□□□ -0.81
HMGB1-202ENST00000339872 IQCJQ1A5X6 159 aa9.96□□□□□ -0.81
HMGB1-202ENST00000339872 OR4C46A6NHA9 309 aa9.96□□□□□ -0.82
HMGB1-202ENST00000339872 KNCNA6PVL3 124 aa9.96□□□□□ -0.82
HMGB1-202ENST00000339872 M0R2Z0 102 aa9.96□□□□□ -0.82
HMGB1-202ENST00000339872 ANXA2RQ3ZCQ2 193 aa9.96□□□□□ -0.82
HMGB1-202ENST00000339872 ZNF493Q6ZR52 646 aa9.96□□□□□ -0.82
HMGB1-202ENST00000339872 RCHY1Q96PM5 261 aa9.96□□□□□ -0.82
HMGB1-202ENST00000339872 SPAG8Q99932 426 aaPredicted RBP9.96□□□□□ -0.82
HMGB1-202ENST00000339872 CNFNQ9BYD5 112 aa9.96□□□□□ -0.82
HMGB1-202ENST00000339872 H3BVH4 76 aa9.95□□□□□ -0.82
HMGB1-202ENST00000339872 TMEM18Q96B42 140 aa9.95□□□□□ -0.82
HMGB1-202ENST00000339872 C12orf57Q99622 126 aa9.95□□□□□ -0.82
HMGB1-202ENST00000339872 MAP6D1Q9H9H5 199 aa9.95□□□□□ -0.82
HMGB1-202ENST00000339872 SIGLEC8Q9NYZ4 499 aa9.95□□□□□ -0.82
HMGB1-202ENST00000339872 MSRB1Q9NZV6 116 aa9.95□□□□□ -0.82
HMGB1-202ENST00000339872 SORL1Q92673 2214 aa9.95□□□□□ -0.82
HMGB1-202ENST00000339872 TRAV12-3A0A0B4J271 114 aa9.95□□□□□ -0.82
HMGB1-202ENST00000339872 SMIM6P0DI80 62 aa9.95□□□□□ -0.82
HMGB1-202ENST00000339872 ZNF124Q15973 351 aa9.95□□□□□ -0.82
HMGB1-202ENST00000339872 SPINK13Q1W4C9 94 aa9.95□□□□□ -0.82
HMGB1-202ENST00000339872 NDUFA11Q86Y39 141 aa9.95□□□□□ -0.82
HMGB1-202ENST00000339872 OR10AG1Q8NH19 301 aa9.95□□□□□ -0.82
HMGB1-202ENST00000339872 TIMM8BQ9Y5J9 83 aaPredicted RBP9.95□□□□□ -0.82
HMGB1-202ENST00000339872 TRAV12-2A0A075B6T6 113 aa9.94□□□□□ -0.82
HMGB1-202ENST00000339872 TRAV25A0A0B4J276 109 aa9.94□□□□□ -0.82
HMGB1-202ENST00000339872 C7orf71A4D174 169 aa9.94□□□□□ -0.82
HMGB1-202ENST00000339872 SAP30O75446 220 aa9.94□□□□□ -0.82
HMGB1-202ENST00000339872 CDKN1BP46527 198 aa9.94□□□□□ -0.82
HMGB1-202ENST00000339872 AMN1Q8IY45 258 aa9.94□□□□□ -0.82
HMGB1-202ENST00000339872 ZNF256Q9Y2P7 627 aaPredicted RBP9.94□□□□□ -0.82
HMGB1-202ENST00000339872 FLNBO75369 2602 aaKnown RBP9.94□□□□□ -0.82
HMGB1-202ENST00000339872 OR5AL1P0C617 328 aa9.94□□□□□ -0.82
HMGB1-202ENST00000339872 S100A4P26447 101 aaKnown RBP9.94□□□□□ -0.82
HMGB1-202ENST00000339872 TSPOP30536 169 aa9.94□□□□□ -0.82
HMGB1-202ENST00000339872 ASIPP42127 132 aa9.94□□□□□ -0.82
HMGB1-202ENST00000339872 SNAI2O43623 268 aa9.93□□□□□ -0.82
HMGB1-202ENST00000339872 ESDP10768 282 aa9.93□□□□□ -0.82
HMGB1-202ENST00000339872 HLA-DRB4P13762 266 aa9.93□□□□□ -0.82
HMGB1-202ENST00000339872 FAM104BQ5XKR9 115 aa9.93□□□□□ -0.82
HMGB1-202ENST00000339872 FAM159AQ6UWV7 190 aa9.93□□□□□ -0.82
HMGB1-202ENST00000339872 AMTNQ6UX39 209 aa9.93□□□□□ -0.82
HMGB1-202ENST00000339872 KCNS1Q96KK3 526 aa9.93□□□□□ -0.82
HMGB1-202ENST00000339872 HLA-DRB4X5D2U9 266 aa9.93□□□□□ -0.82
HMGB1-202ENST00000339872 C2CD3Q4AC94 2353 aa9.92□□□□□ -0.82
HMGB1-202ENST00000339872 GNRH2O43555 120 aa9.92□□□□□ -0.82
HMGB1-202ENST00000339872 SPANXN1Q5VSR9 72 aa9.92□□□□□ -0.82
HMGB1-202ENST00000339872 SAMD10Q9BYL1 202 aa9.92□□□□□ -0.82
HMGB1-202ENST00000339872 TMEM191AQ9H0A3 160 aa9.92□□□□□ -0.82
HMGB1-202ENST00000339872 H3BMM0 161 aa9.91□□□□□ -0.82
HMGB1-202ENST00000339872 ZNF324O75467 553 aaPredicted RBP9.91□□□□□ -0.82
HMGB1-202ENST00000339872 PF4P02776 101 aa9.91□□□□□ -0.82
HMGB1-202ENST00000339872 FXYD7P58549 80 aa9.91□□□□□ -0.82
HMGB1-202ENST00000339872 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.91□□□□□ -0.82
HMGB1-202ENST00000339872 F8P00451 2351 aa9.91□□□□□ -0.82
HMGB1-202ENST00000339872 CACNG7P62955 275 aa9.91□□□□□ -0.82
HMGB1-202ENST00000339872 MRPL51Q4U2R6 128 aaKnown RBP9.91□□□□□ -0.82
HMGB1-202ENST00000339872 PYY3Q5JQD4 70 aa9.91□□□□□ -0.82
HMGB1-202ENST00000339872 RNASEKQ6P5S7 137 aaKnown RBP9.91□□□□□ -0.82
HMGB1-202ENST00000339872 D6R8Y8 96 aa9.9□□□□□ -0.82
HMGB1-202ENST00000339872 SPRY2O43597 315 aa9.9□□□□□ -0.82
HMGB1-202ENST00000339872 PMCHP20382 165 aa9.9□□□□□ -0.82
HMGB1-202ENST00000339872 ODF3L2Q3SX64 289 aa9.9□□□□□ -0.82
HMGB1-202ENST00000339872 RBMY1BA6NDE4 496 aaKnown RBP9.9□□□□□ -0.82
HMGB1-202ENST00000339872 RBMY1EA6NEQ0 496 aaKnown RBP9.9□□□□□ -0.82
HMGB1-202ENST00000339872 A8MTW9 85 aa9.9□□□□□ -0.82
HMGB1-202ENST00000339872 RBMY1DP0C7P1 496 aaKnown RBP9.9□□□□□ -0.82
HMGB1-202ENST00000339872 PHLDA3Q9Y5J5 127 aa9.9□□□□□ -0.82
HMGB1-202ENST00000339872 IGHV4-4A0A075B6R2 117 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 M0R381 172 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 CD7P09564 240 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 MED14OSP0DP75 135 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 RNASE3P12724 160 aaKnown RBP9.89□□□□□ -0.83
HMGB1-202ENST00000339872 AMTP48728 403 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 HSBP1O75506 76 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 IGLV1-51P01701 117 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 EVI2AP22794 236 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 DNLZQ5SXM8 178 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 DMRTA1Q5VZB9 504 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 SMIM15Q7Z3B0 74 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 NIT1Q86X76 327 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 ORMDL3Q8N138 153 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 RNF185Q96GF1 192 aa9.89□□□□□ -0.83
HMGB1-202ENST00000339872 OR11H12B2RN74 326 aa9.88□□□□□ -0.83
HMGB1-202ENST00000339872 SMKR1H3BMG3 65 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms