RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 IGHV7-4-1A0A0J9YVY3 117 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 ATP5G1P05496 136 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 GATD1Q8NB37 220 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 FGF6P10767 208 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 C12orf74Q32Q52 190 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 IGFL2Q6UWQ7 119 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 C11orf53Q8IXP5 236 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 C9orf153Q5TBE3 101 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 GAGE2AQ6NT46 116 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 ZNF524Q96C55 264 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 TRAV8-3A0A0A6YYJ7 113 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 ETDBQ3ZM63 59 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 PLA2G2CQ5R387 149 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 NDUFA12Q9UI09 145 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 P0C879 139 aa8.14□□□□□ -1.11
CCDC88A-202ENST00000336838 AZU1P20160 251 aa8.13□□□□□ -1.11
CCDC88A-202ENST00000336838 C1orf159Q96HA4 380 aa8.13□□□□□ -1.11
CCDC88A-202ENST00000336838 TSSC4Q9Y5U2 329 aaPredicted RBP8.13□□□□□ -1.11
CCDC88A-202ENST00000336838 F8WEM9 126 aa8.13□□□□□ -1.11
CCDC88A-202ENST00000336838 FSTL3O95633 263 aa8.13□□□□□ -1.11
CCDC88A-202ENST00000336838 TEN1Q86WV5 123 aa8.13□□□□□ -1.11
CCDC88A-202ENST00000336838 NDPQ00604 133 aa8.13□□□□□ -1.11
CCDC88A-202ENST00000336838 IGHV3-64A0A075B6Q5 118 aa8.13□□□□□ -1.11
CCDC88A-202ENST00000336838 MSMBP08118 114 aa8.13□□□□□ -1.11
CCDC88A-202ENST00000336838 KLRD1Q13241 179 aa8.13□□□□□ -1.11
CCDC88A-202ENST00000336838 ELANEP08246 267 aa8.13□□□□□ -1.11
CCDC88A-202ENST00000336838 TMEM219Q86XT9 240 aa8.13□□□□□ -1.11
CCDC88A-202ENST00000336838 LYNX1G3V0Z9 82 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 LYNX1P0DP58 116 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 LINC00205P59089 165 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 A0A087WWL8 130 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 FAM167A-AS1Q96KT0 104 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 TMEM243Q9BU79 118 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 PIFOQ8TCI5 191 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 COL8A2P25067 703 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 TLN1Q9Y490 2541 aaKnown RBP8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 GAGE12JA6NER3 117 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 K7ENP7 123 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 GAGE7O76087 117 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 GAGE12FP0CL80 117 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 GAGE12GP0CL81 117 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 GAGE12IP0CL82 117 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 GAGE4Q13068 117 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 EDA2RQ9HAV5 297 aa8.12□□□□□ -1.11
CCDC88A-202ENST00000336838 ZNF503-AS2A6NEH8 195 aa8.11□□□□□ -1.11
CCDC88A-202ENST00000336838 OVOL3O00110 214 aa8.11□□□□□ -1.11
CCDC88A-202ENST00000336838 HIST1H4AP62805 103 aaKnown RBP8.11□□□□□ -1.11
CCDC88A-202ENST00000336838 TMEM126AQ9H061 195 aa8.11□□□□□ -1.11
CCDC88A-202ENST00000336838 RAI1Q7Z5J4 1906 aaPredicted RBP8.11□□□□□ -1.11
CCDC88A-202ENST00000336838 LINC01619G3V211 115 aa8.11□□□□□ -1.11
CCDC88A-202ENST00000336838 NAA38Q9BRA0 125 aaKnown RBP8.11□□□□□ -1.11
CCDC88A-202ENST00000336838 CCL25O15444 150 aa8.11□□□□□ -1.11
CCDC88A-202ENST00000336838 IGKV3D-20A0A0C4DH25 116 aa8.11□□□□□ -1.11
CCDC88A-202ENST00000336838 Q71RC1 249 aaPredicted RBP8.11□□□□□ -1.11
CCDC88A-202ENST00000336838 MLANAQ16655 118 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 SH2D6Q7Z4S9 175 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 TIMM17AQ99595 171 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 TMEM89A2RUT3 159 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 C5orf24Q7Z6I8 188 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 H0YGX0 51 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 SAP30O75446 220 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 SMIM20Q8N5G0 67 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 I3L2K1 104 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 C9orf47Q6ZRZ4 202 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 CFC1BP0CG36 223 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 CFC1P0CG37 223 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 ZFHX2Q9C0A1 2572 aaPredicted RBP8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 IGLV11-55A0A075B6I3 123 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 IGLV2-14P01704 120 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 TRACP01848 142 aa8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 SONP18583 2426 aaKnown RBP8.1□□□□□ -1.11
CCDC88A-202ENST00000336838 ANKRD29Q8N6D5 301 aa8.09□□□□□ -1.11
CCDC88A-202ENST00000336838 KLHL30-AS1Q8NEE0 82 aa8.09□□□□□ -1.11
CCDC88A-202ENST00000336838 MSRB2Q9Y3D2 182 aa8.09□□□□□ -1.11
CCDC88A-202ENST00000336838 TCF15Q12870 199 aa8.09□□□□□ -1.11
CCDC88A-202ENST00000336838 CARD19Q96LW7 228 aa8.09□□□□□ -1.11
CCDC88A-202ENST00000336838 BPESC1Q9GZL8 116 aa8.09□□□□□ -1.11
CCDC88A-202ENST00000336838 FXYD7P58549 80 aa8.09□□□□□ -1.11
CCDC88A-202ENST00000336838 DAZ2Q13117 558 aaKnown RBP8.09□□□□□ -1.11
CCDC88A-202ENST00000336838 DAZ4Q86SG3 579 aaKnown RBP8.09□□□□□ -1.11
CCDC88A-202ENST00000336838 DAZ3Q9NR90 486 aaKnown RBP8.09□□□□□ -1.11
CCDC88A-202ENST00000336838 FAM215AQ9Y5M1 114 aa8.09□□□□□ -1.11
CCDC88A-202ENST00000336838 EGR2P11161 476 aaPredicted RBP8.09□□□□□ -1.11
CCDC88A-202ENST00000336838 DSCR8Q96T75 97 aa8.09□□□□□ -1.11
CCDC88A-202ENST00000336838 WISP1O95388 367 aa8.09□□□□□ -1.12
CCDC88A-202ENST00000336838 FAM120AOSQ5T036 256 aa8.09□□□□□ -1.12
CCDC88A-202ENST00000336838 PIP4P1Q86T03 277 aa8.09□□□□□ -1.12
CCDC88A-202ENST00000336838 GAGE5Q13069 117 aa8.08□□□□□ -1.12
CCDC88A-202ENST00000336838 GAGE6Q13070 117 aa8.08□□□□□ -1.12
CCDC88A-202ENST00000336838 TOMM6Q96B49 74 aa8.08□□□□□ -1.12
CCDC88A-202ENST00000336838 HOXB4P17483 251 aaPredicted RBP8.08□□□□□ -1.12
CCDC88A-202ENST00000336838 CRYGCP07315 174 aa8.08□□□□□ -1.12
CCDC88A-202ENST00000336838 TEX48A0A1B0GUV7 120 aa8.08□□□□□ -1.12
CCDC88A-202ENST00000336838 A0A1B0GXF2 115 aa8.08□□□□□ -1.12
CCDC88A-202ENST00000336838 SLC25A29Q8N8R3 303 aa8.08□□□□□ -1.12
CCDC88A-202ENST00000336838 TRAV13-1A0A0B4J241 112 aa8.08□□□□□ -1.12
CCDC88A-202ENST00000336838 LHFPL4Q7Z7J7 247 aa8.08□□□□□ -1.12
CCDC88A-202ENST00000336838 PRSS29PA6NIE9 313 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 H3BT86 120 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 K7EIM0 57 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 1395.6 ms