RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ADIRFQ15847 76 aa11.26□□□□□ -0.61
CLN3-201ENST00000333496 PQLC2Q6ZP29 291 aa11.26□□□□□ -0.61
CLN3-201ENST00000333496 LYPD1Q8N2G4 141 aa11.26□□□□□ -0.61
CLN3-201ENST00000333496 ANAPC16Q96DE5 110 aa11.26□□□□□ -0.61
CLN3-201ENST00000333496 VGLL1Q99990 258 aa11.26□□□□□ -0.61
CLN3-201ENST00000333496 Q9H3A6 140 aa11.26□□□□□ -0.61
CLN3-201ENST00000333496 APLNQ9ULZ1 77 aa11.26□□□□□ -0.61
CLN3-201ENST00000333496 F6UZH7 168 aa11.25□□□□□ -0.61
CLN3-201ENST00000333496 HTN1P15515 57 aa11.25□□□□□ -0.61
CLN3-201ENST00000333496 LEPP41159 167 aa11.25□□□□□ -0.61
CLN3-201ENST00000333496 TRAV12-3A0A0B4J271 114 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 TEX48A0A1B0GUV7 120 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 KLLNB2CW77 178 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 H7BYZ3 331 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 TCTAP57738 103 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 RPL23P62829 140 aaKnown RBP11.24□□□□□ -0.61
CLN3-201ENST00000333496 IGHV4-4A0A075B6R2 117 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 HIST1H2BKO60814 126 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 PAGE4O60829 102 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 HIST1H2BJP06899 126 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 HIST1H2BOP23527 126 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 S100A2P29034 98 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 HIST1H2BBP33778 126 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 HIST1H2BDP58876 126 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 HIST1H2BCP62807 126 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 HIST2H2BEQ16778 126 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.24□□□□□ -0.61
CLN3-201ENST00000333496 RNASE8Q8TDE3 154 aaKnown RBP11.24□□□□□ -0.61
CLN3-201ENST00000333496 HIST1H2BHQ93079 126 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 BTF3L4Q96K17 158 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 HIST1H2BNQ99877 126 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 HIST1H2BMQ99879 126 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 PYGO2Q9BRQ0 406 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 TMEM167BQ9NRX6 74 aa11.24□□□□□ -0.61
CLN3-201ENST00000333496 PPP1R2P9O14990 202 aa11.23□□□□□ -0.61
CLN3-201ENST00000333496 TRGC2P03986 189 aa11.23□□□□□ -0.61
CLN3-201ENST00000333496 SLC25A5P05141 298 aaKnown RBP11.23□□□□□ -0.61
CLN3-201ENST00000333496 CRISP2P16562 243 aa11.23□□□□□ -0.61
CLN3-201ENST00000333496 NDUFA6P56556 154 aa11.23□□□□□ -0.61
CLN3-201ENST00000333496 CTAG1AP78358 180 aa11.23□□□□□ -0.61
CLN3-201ENST00000333496 LGALS9CQ6DKI2 356 aa11.23□□□□□ -0.61
CLN3-201ENST00000333496 C16orf74Q96GX8 76 aa11.23□□□□□ -0.61
CLN3-201ENST00000333496 ZNF492Q9P255 531 aa11.23□□□□□ -0.61
CLN3-201ENST00000333496 DNAH6Q9C0G6 4158 aa11.22□□□□□ -0.61
CLN3-201ENST00000333496 LYRM9A8MSI8 78 aa11.22□□□□□ -0.61
CLN3-201ENST00000333496 ZNF324O75467 553 aaPredicted RBP11.22□□□□□ -0.61
CLN3-201ENST00000333496 UBE2G2P60604 165 aa11.22□□□□□ -0.61
CLN3-201ENST00000333496 TMEM78Q5T7P6 136 aa11.22□□□□□ -0.61
CLN3-201ENST00000333496 PRR9Q5T870 116 aa11.22□□□□□ -0.61
CLN3-201ENST00000333496 ZFAND2AQ8N6M9 145 aa11.22□□□□□ -0.61
CLN3-201ENST00000333496 TMEM263Q8WUH6 116 aaKnown RBP11.22□□□□□ -0.61
CLN3-201ENST00000333496 C7orf71A4D174 169 aa11.21□□□□□ -0.61
CLN3-201ENST00000333496 RBAKDNA6NC62 111 aa11.21□□□□□ -0.61
CLN3-201ENST00000333496 PGPA6NDG6 321 aa11.21□□□□□ -0.61
CLN3-201ENST00000333496 DIRC3C9JPN6 131 aa11.21□□□□□ -0.61
CLN3-201ENST00000333496 DAD1P61803 113 aa11.21□□□□□ -0.61
CLN3-201ENST00000333496 ZNF493Q6ZR52 646 aa11.21□□□□□ -0.61
CLN3-201ENST00000333496 Q8TAT8 98 aa11.21□□□□□ -0.61
CLN3-201ENST00000333496 NIT2Q9NQR4 276 aa11.21□□□□□ -0.61
CLN3-201ENST00000333496 OTORQ9NRC9 128 aa11.21□□□□□ -0.61
CLN3-201ENST00000333496 PFN1P07737 140 aaKnown RBP11.2□□□□□ -0.62
CLN3-201ENST00000333496 CSN1S1P47710 185 aa11.2□□□□□ -0.62
CLN3-201ENST00000333496 ZNF138P52744 262 aa11.2□□□□□ -0.62
CLN3-201ENST00000333496 FAM3BP58499 235 aaPredicted RBP11.2□□□□□ -0.62
CLN3-201ENST00000333496 CST9LP1Q5W188 147 aa11.2□□□□□ -0.62
CLN3-201ENST00000333496 KCNIP4Q6PIL6 250 aa11.2□□□□□ -0.62
CLN3-201ENST00000333496 Q6ZQT7 251 aa11.2□□□□□ -0.62
CLN3-201ENST00000333496 ARL2-SNX15V9GYD0 113 aa11.2□□□□□ -0.62
CLN3-201ENST00000333496 GPX1P07203 203 aa11.2□□□□□ -0.62
CLN3-201ENST00000333496 TRGC1P0CF51 173 aa11.2□□□□□ -0.62
CLN3-201ENST00000333496 RNASE4P34096 147 aaKnown RBP11.2□□□□□ -0.62
CLN3-201ENST00000333496 DNLZQ5SXM8 178 aa11.2□□□□□ -0.62
CLN3-201ENST00000333496 TIMM8BQ9Y5J9 83 aaPredicted RBP11.2□□□□□ -0.62
CLN3-201ENST00000333496 PHOX2AO14813 284 aa11.19□□□□□ -0.62
CLN3-201ENST00000333496 DEFB130BP0DP73 79 aa11.19□□□□□ -0.62
CLN3-201ENST00000333496 DEFB130AP0DP74 79 aa11.19□□□□□ -0.62
CLN3-201ENST00000333496 HTN3P15516 51 aa11.19□□□□□ -0.62
CLN3-201ENST00000333496 ATP5G3P48201 142 aa11.19□□□□□ -0.62
CLN3-201ENST00000333496 FRZBQ92765 325 aa11.19□□□□□ -0.62
CLN3-201ENST00000333496 IMMP2LQ96T52 175 aa11.19□□□□□ -0.62
CLN3-201ENST00000333496 NOP10Q9NPE3 64 aaKnown RBP11.19□□□□□ -0.62
CLN3-201ENST00000333496 TRBV7-9A0A0J9YWB2 115 aa11.18□□□□□ -0.62
CLN3-201ENST00000333496 TYMSP04818 313 aa11.18□□□□□ -0.62
CLN3-201ENST00000333496 HIST3H2BBQ8N257 126 aa11.18□□□□□ -0.62
CLN3-201ENST00000333496 LINC01551Q86U37 167 aa11.17□□□□□ -0.62
CLN3-201ENST00000333496 LINC00467Q9BRT7 94 aa11.17□□□□□ -0.62
CLN3-201ENST00000333496 NDUFAF3Q9BU61 184 aa11.17□□□□□ -0.62
CLN3-201ENST00000333496 GSN-AS1Q9NRJ2 163 aa11.17□□□□□ -0.62
CLN3-201ENST00000333496 RPH3ALQ9UNE2 315 aa11.17□□□□□ -0.62
CLN3-201ENST00000333496 A0A1W2PRE2 83 aa11.17□□□□□ -0.62
CLN3-201ENST00000333496 IFITM10A6NMD0 228 aa11.17□□□□□ -0.62
CLN3-201ENST00000333496 GNG5P63218 68 aa11.17□□□□□ -0.62
CLN3-201ENST00000333496 ARL6IP6Q8N6S5 226 aa11.17□□□□□ -0.62
CLN3-201ENST00000333496 CMTM2Q8TAZ6 248 aa11.17□□□□□ -0.62
CLN3-201ENST00000333496 FRAS1Q86XX4 4008 aa11.16□□□□□ -0.62
CLN3-201ENST00000333496 GOLT1AQ6ZVE7 132 aa11.16□□□□□ -0.62
CLN3-201ENST00000333496 LINC00612Q8N6U2 182 aa11.16□□□□□ -0.62
CLN3-201ENST00000333496 C11orf72Q8NBR9 251 aa11.16□□□□□ -0.62
CLN3-201ENST00000333496 LENEPQ9Y5L5 61 aa11.16□□□□□ -0.62
CLN3-201ENST00000333496 TRAV8-1A0A0A6YYK1 113 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms