RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 F8W1H4 67 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 RRN3P1Q2M238 152 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 C20orf78Q9BR46 151 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 NDUFS8O00217 210 aa11.48□□□□□ -0.57
TCOF1-201ENST00000323668 PLEKHB2Q96CS7 222 aa11.48□□□□□ -0.57
TCOF1-201ENST00000323668 MRPL53Q96EL3 112 aaKnown RBP11.48□□□□□ -0.57
TCOF1-201ENST00000323668 MSRB2Q9Y3D2 182 aa11.48□□□□□ -0.57
TCOF1-201ENST00000323668 LENEPQ9Y5L5 61 aa11.48□□□□□ -0.57
TCOF1-201ENST00000323668 C5orf42Q9H799 3197 aa11.48□□□□□ -0.57
TCOF1-201ENST00000323668 IGHV1-69DA0A0B4J2H0 117 aa11.48□□□□□ -0.57
TCOF1-201ENST00000323668 IGHV1-69P01742 117 aa11.48□□□□□ -0.57
TCOF1-201ENST00000323668 HOXB4P17483 251 aaPredicted RBP11.48□□□□□ -0.57
TCOF1-201ENST00000323668 IGHV4-39P01824 125 aa11.47□□□□□ -0.57
TCOF1-201ENST00000323668 CRXO43186 299 aaPredicted RBP11.47□□□□□ -0.57
TCOF1-201ENST00000323668 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.47□□□□□ -0.57
TCOF1-201ENST00000323668 LOXL1Q08397 574 aaPredicted RBP11.47□□□□□ -0.57
TCOF1-201ENST00000323668 CSPG4Q6UVK1 2322 aa11.47□□□□□ -0.57
TCOF1-201ENST00000323668 PRAC2D3DTV9 90 aa11.47□□□□□ -0.57
TCOF1-201ENST00000323668 PMVKQ15126 192 aa11.47□□□□□ -0.57
TCOF1-201ENST00000323668 B4DSR2 109 aa11.46□□□□□ -0.57
TCOF1-201ENST00000323668 H3BMG7 143 aa11.46□□□□□ -0.57
TCOF1-201ENST00000323668 C12orf74Q32Q52 190 aa11.46□□□□□ -0.57
TCOF1-201ENST00000323668 SDHAF1A6NFY7 115 aa11.46□□□□□ -0.58
TCOF1-201ENST00000323668 Q8N9W7 124 aa11.46□□□□□ -0.58
TCOF1-201ENST00000323668 ZNF48Q96MX3 618 aaPredicted RBP11.46□□□□□ -0.58
TCOF1-201ENST00000323668 CRYGBP07316 175 aa11.45□□□□□ -0.58
TCOF1-201ENST00000323668 TTTY13Q9BZ97 58 aa11.45□□□□□ -0.58
TCOF1-201ENST00000323668 PEMTQ9UBM1 199 aa11.45□□□□□ -0.58
TCOF1-201ENST00000323668 TP73-AS1Q9UF72 201 aa11.45□□□□□ -0.58
TCOF1-201ENST00000323668 CENPVL3A0A0U1RRI6 287 aa11.45□□□□□ -0.58
TCOF1-201ENST00000323668 AMTNQ6UX39 209 aa11.45□□□□□ -0.58
TCOF1-201ENST00000323668 NEGR1Q7Z3B1 354 aa11.45□□□□□ -0.58
TCOF1-201ENST00000323668 CACNA1AO00555 2505 aa11.45□□□□□ -0.58
TCOF1-201ENST00000323668 TMEM141Q96I45 108 aa11.45□□□□□ -0.58
TCOF1-201ENST00000323668 TSSC4Q9Y5U2 329 aaPredicted RBP11.45□□□□□ -0.58
TCOF1-201ENST00000323668 A0A0C4DFX4 3053 aa11.45□□□□□ -0.58
TCOF1-201ENST00000323668 IGHV3-73A0A0B4J1V6 119 aa11.44□□□□□ -0.58
TCOF1-201ENST00000323668 TEX29Q8N6K0 151 aa11.44□□□□□ -0.58
TCOF1-201ENST00000323668 IGKV3D-20A0A0C4DH25 116 aa11.44□□□□□ -0.58
TCOF1-201ENST00000323668 IGKV3OR2-268A0A0C4DH90 116 aa11.44□□□□□ -0.58
TCOF1-201ENST00000323668 SAP30O75446 220 aa11.44□□□□□ -0.58
TCOF1-201ENST00000323668 YAE1D1Q9NRH1 226 aa11.44□□□□□ -0.58
TCOF1-201ENST00000323668 PRSS29PA6NIE9 313 aa11.44□□□□□ -0.58
TCOF1-201ENST00000323668 PIP4P2Q8N4L2 257 aa11.43□□□□□ -0.58
TCOF1-201ENST00000323668 K7EMI3 77 aa11.43□□□□□ -0.58
TCOF1-201ENST00000323668 GNLYP22749 145 aa11.43□□□□□ -0.58
TCOF1-201ENST00000323668 FXYD2P54710 66 aa11.43□□□□□ -0.58
TCOF1-201ENST00000323668 TRPT1Q86TN4 253 aaKnown RBP11.43□□□□□ -0.58
TCOF1-201ENST00000323668 Q8N976 141 aa11.43□□□□□ -0.58
TCOF1-201ENST00000323668 HIGD1BQ9P298 99 aa11.43□□□□□ -0.58
TCOF1-201ENST00000323668 DSCAMO60469 2012 aa11.42□□□□□ -0.58
TCOF1-201ENST00000323668 VWC2LB2RUY7 222 aa11.42□□□□□ -0.58
TCOF1-201ENST00000323668 SPRY2O43597 315 aa11.42□□□□□ -0.58
TCOF1-201ENST00000323668 ODF1Q14990 250 aa11.42□□□□□ -0.58
TCOF1-201ENST00000323668 Q8NA96 180 aa11.42□□□□□ -0.58
TCOF1-201ENST00000323668 TMEM101Q96IK0 257 aa11.42□□□□□ -0.58
TCOF1-201ENST00000323668 F6UB75 175 aa11.42□□□□□ -0.58
TCOF1-201ENST00000323668 ZNF80P51504 273 aaPredicted RBP11.42□□□□□ -0.58
TCOF1-201ENST00000323668 TRBV20-1A0A075B6N2 111 aa11.42□□□□□ -0.58
TCOF1-201ENST00000323668 GNRH2O43555 120 aa11.42□□□□□ -0.58
TCOF1-201ENST00000323668 SPXQ9BT56 116 aa11.42□□□□□ -0.58
TCOF1-201ENST00000323668 CUL9Q8IWT3 2517 aa11.42□□□□□ -0.58
TCOF1-201ENST00000323668 DNAL4O96015 105 aa11.41□□□□□ -0.58
TCOF1-201ENST00000323668 CRIP1P50238 77 aa11.41□□□□□ -0.58
TCOF1-201ENST00000323668 SYNJ2BPP57105 145 aa11.41□□□□□ -0.58
TCOF1-201ENST00000323668 M0R2P5 195 aa11.41□□□□□ -0.58
TCOF1-201ENST00000323668 IGLV2-11P01706 119 aa11.41□□□□□ -0.58
TCOF1-201ENST00000323668 SPINK13Q1W4C9 94 aa11.41□□□□□ -0.58
TCOF1-201ENST00000323668 PRRC2CQ9Y520 2896 aaKnown RBP11.4□□□□□ -0.58
TCOF1-201ENST00000323668 IGHV7-4-1A0A0J9YVY3 117 aa11.4□□□□□ -0.58
TCOF1-201ENST00000323668 MSMBP08118 114 aa11.4□□□□□ -0.58
TCOF1-201ENST00000323668 LY6G5BQ8NDX9 201 aa11.4□□□□□ -0.58
TCOF1-201ENST00000323668 TIMM21Q9BVV7 248 aa11.4□□□□□ -0.58
TCOF1-201ENST00000323668 TEX48A0A1B0GUV7 120 aa11.4□□□□□ -0.58
TCOF1-201ENST00000323668 GAGE12HA6NDE8 117 aa11.4□□□□□ -0.58
TCOF1-201ENST00000323668 IGLL5B9A064 214 aa11.4□□□□□ -0.58
TCOF1-201ENST00000323668 DSCR9P59020 149 aa11.4□□□□□ -0.58
TCOF1-201ENST00000323668 CKS1BP61024 79 aa11.4□□□□□ -0.58
TCOF1-201ENST00000323668 A0A0U1RRA0 63 aa11.39□□□□□ -0.59
TCOF1-201ENST00000323668 C9JAW5 83 aa11.39□□□□□ -0.59
TCOF1-201ENST00000323668 ANAPC13Q9BS18 74 aa11.39□□□□□ -0.59
TCOF1-201ENST00000323668 SPINK8P0C7L1 97 aa11.39□□□□□ -0.59
TCOF1-201ENST00000323668 NBL1P41271 181 aa11.39□□□□□ -0.59
TCOF1-201ENST00000323668 Q5PR19 223 aa11.39□□□□□ -0.59
TCOF1-201ENST00000323668 IGLC6P0CF74 106 aa11.39□□□□□ -0.59
TCOF1-201ENST00000323668 RPL39LQ96EH5 51 aaKnown RBP11.39□□□□□ -0.59
TCOF1-201ENST00000323668 TOMM7Q9P0U1 55 aa11.39□□□□□ -0.59
TCOF1-201ENST00000323668 SRSF2Q01130 221 aaKnown RBP11.38□□□□□ -0.59
TCOF1-201ENST00000323668 C9orf47Q6ZRZ4 202 aa11.38□□□□□ -0.59
TCOF1-201ENST00000323668 IGHV1OR15-1A0A075B7D0 117 aa11.38□□□□□ -0.59
TCOF1-201ENST00000323668 ZFP36P26651 326 aaKnown RBP11.38□□□□□ -0.59
TCOF1-201ENST00000323668 ZNF415Q09FC8 603 aa11.38□□□□□ -0.59
TCOF1-201ENST00000323668 GAGE2BQ13066 116 aa11.38□□□□□ -0.59
TCOF1-201ENST00000323668 GAGE2EQ4V326 116 aa11.38□□□□□ -0.59
TCOF1-201ENST00000323668 STHQ8IWL8 128 aa11.38□□□□□ -0.59
TCOF1-201ENST00000323668 GAGE2DQ9UEU5 116 aa11.38□□□□□ -0.59
TCOF1-201ENST00000323668 C16orf54Q6UWD8 224 aa11.38□□□□□ -0.59
TCOF1-201ENST00000323668 KLK9Q9UKQ9 250 aa11.38□□□□□ -0.59
TCOF1-201ENST00000323668 ATXN8Q156A1 80 aa11.38□□□□□ -0.59
TCOF1-201ENST00000323668 FBXL19-AS1Q494R0 122 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms