RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 SMCPP49901 116 aaPredicted RBP3.67□□□□□ -1.82
PTPN13-201ENST00000316707 ANKHD1Q8IWZ3 2542 aaKnown RBP3.67□□□□□ -1.82
PTPN13-201ENST00000316707 TRAV8-2A0A0B4J237 113 aa3.67□□□□□ -1.82
PTPN13-201ENST00000316707 A0A0B4J2C4 111 aa3.67□□□□□ -1.82
PTPN13-201ENST00000316707 H3BT86 120 aa3.67□□□□□ -1.82
PTPN13-201ENST00000316707 H3BVH4 76 aa3.67□□□□□ -1.82
PTPN13-201ENST00000316707 RNF183Q96D59 192 aa3.67□□□□□ -1.82
PTPN13-201ENST00000316707 A0A0C4DFX4 3053 aa3.67□□□□□ -1.82
PTPN13-201ENST00000316707 ATXN8Q156A1 80 aa3.67□□□□□ -1.82
PTPN13-201ENST00000316707 ODF3BA8MYP8 253 aa3.67□□□□□ -1.82
PTPN13-201ENST00000316707 J3QQQ9 107 aa3.67□□□□□ -1.82
PTPN13-201ENST00000316707 RASL10AQ92737 203 aa3.67□□□□□ -1.82
PTPN13-201ENST00000316707 CITED1Q99966 193 aa3.67□□□□□ -1.82
PTPN13-201ENST00000316707 KLK15Q9H2R5 256 aa3.67□□□□□ -1.82
PTPN13-201ENST00000316707 ARFGEF3Q5TH69 2177 aa3.67□□□□□ -1.82
PTPN13-201ENST00000316707 C15orf32Q32M92 178 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 NFE4Q86UQ8 179 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 RAX2Q96IS3 184 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 FAM240AA0A1B0GVK7 77 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 SDHAF1A6NFY7 115 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 F8W735 103 aaPredicted RBP3.66□□□□□ -1.82
PTPN13-201ENST00000316707 GAS8-AS1O95177 125 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 LINC01620Q4KN68 170 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 PIP4P1Q86T03 277 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 ANKRD29Q8N6D5 301 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 Q8N6K4 173 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 BAALCQ8WXS3 180 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 NCKAP5O14513 1909 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 PKDREJQ9NTG1 2253 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 IGHV7-4-1A0A0J9YVY3 117 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 PRAC2D3DTV9 90 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 TCL1BO95988 128 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 C11orf21Q9P2W6 132 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 SMAD5-AS1Q9Y6J3 95 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 TRANK1O15050 2925 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 EML6Q6ZMW3 1958 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 TRBV7-1A0A0A6YYK4 115 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 TMEM170BQ5T4T1 132 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 CFAP161Q6P656 301 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 C16orf92Q96LL3 132 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 ZFAND3Q9H8U3 227 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 A0A0J9YX75 114 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 TRGV3P03979 118 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 IFITM1P13164 125 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 KMT2EQ8IZD2 1858 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 U3KQE9 123 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 M0R2P5 195 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 NDUFV3P56181 108 aaKnown RBP3.66□□□□□ -1.82
PTPN13-201ENST00000316707 CARD19Q96LW7 228 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 EP300Q09472 2414 aaPredicted RBP3.66□□□□□ -1.82
PTPN13-201ENST00000316707 ICE1Q9Y2F5 2266 aa3.66□□□□□ -1.82
PTPN13-201ENST00000316707 IGHV3-30P01768 117 aa3.65□□□□□ -1.82
PTPN13-201ENST00000316707 IGHV3-30-5P0DP03 117 aa3.65□□□□□ -1.82
PTPN13-201ENST00000316707 RHOHQ15669 191 aa3.65□□□□□ -1.82
PTPN13-201ENST00000316707 PRR30Q53SZ7 412 aaPredicted RBP3.65□□□□□ -1.82
PTPN13-201ENST00000316707 C22orf34Q6ZV56 151 aa3.65□□□□□ -1.82
PTPN13-201ENST00000316707 POM121L12Q8N7R1 296 aa3.65□□□□□ -1.82
PTPN13-201ENST00000316707 S4R3C0 116 aa3.65□□□□□ -1.82
PTPN13-201ENST00000316707 VMO1Q7Z5L0 202 aa3.65□□□□□ -1.82
PTPN13-201ENST00000316707 C14orf178Q8N769 122 aaPredicted RBP3.65□□□□□ -1.82
PTPN13-201ENST00000316707 TRBV6-5A0A0K0K1A5 114 aa3.65□□□□□ -1.82
PTPN13-201ENST00000316707 C9JAW5 83 aa3.65□□□□□ -1.82
PTPN13-201ENST00000316707 E7EQL1 145 aa3.65□□□□□ -1.82
PTPN13-201ENST00000316707 NXPH4O95158 308 aa3.65□□□□□ -1.82
PTPN13-201ENST00000316707 ACYP1P07311 99 aa3.65□□□□□ -1.82
PTPN13-201ENST00000316707 POLR2KP53803 58 aaKnown RBP3.65□□□□□ -1.82
PTPN13-201ENST00000316707 TRBV10-2A0A0K0K1G8 114 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 B5MCH6 92 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 IGHV3-33P01772 117 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 ZFP2Q6ZN57 461 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 TP53TG1Q9Y2A0 90 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 PRR14LQ5THK1 2151 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 IGHV7-81A0A0B4J1V7 117 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 TRAV8-4A0A0B4J246 113 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 TRAV26-2A0A0B4J265 109 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 DNAL4O96015 105 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 IGHV1-69P01742 117 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 NTN5Q8WTR8 489 aaPredicted RBP3.65□□□□□ -1.83
PTPN13-201ENST00000316707 PTH2Q96A98 100 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 YAE1D1Q9NRH1 226 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 MGPP08493 103 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 NDPQ00604 133 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 IGFL4Q6B9Z1 124 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 ZNF575Q86XF7 245 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 TMEM101Q96IK0 257 aa3.65□□□□□ -1.83
PTPN13-201ENST00000316707 TRBV30A0A0K0K1B3 111 aa3.64□□□□□ -1.83
PTPN13-201ENST00000316707 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.64□□□□□ -1.83
PTPN13-201ENST00000316707 FAM110AQ9BQ89 295 aa3.64□□□□□ -1.83
PTPN13-201ENST00000316707 ZNF256Q9Y2P7 627 aaPredicted RBP3.64□□□□□ -1.83
PTPN13-201ENST00000316707 CNOT1A5YKK6 2376 aaKnown RBP3.64□□□□□ -1.83
PTPN13-201ENST00000316707 KIAA1549Q9HCM3 1950 aa3.64□□□□□ -1.83
PTPN13-201ENST00000316707 WDR87Q6ZQQ6 2873 aa3.64□□□□□ -1.83
PTPN13-201ENST00000316707 A4D1N5 150 aa3.64□□□□□ -1.83
PTPN13-201ENST00000316707 IGIPA6NJ69 53 aa3.64□□□□□ -1.83
PTPN13-201ENST00000316707 ZNF876PQ49A33 203 aa3.64□□□□□ -1.83
PTPN13-201ENST00000316707 Q8N1Y9 231 aa3.64□□□□□ -1.83
PTPN13-201ENST00000316707 COPS9Q8WXC6 57 aa3.64□□□□□ -1.83
PTPN13-201ENST00000316707 IMUPQ9GZP8 106 aa3.64□□□□□ -1.83
PTPN13-201ENST00000316707 A0A0G2JNJ9 132 aa3.64□□□□□ -1.83
PTPN13-201ENST00000316707 DUSP14O95147 198 aaKnown RBP3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms