RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 SELENOKQ9Y6D0 94 aa18.11■□□□□ 0.49
TRIM54-201ENST00000296098 Q6YL49 198 aa18.1■□□□□ 0.49
TRIM54-201ENST00000296098 TCAPO15273 167 aa18.1■□□□□ 0.49
TRIM54-201ENST00000296098 SRD5A1P18405 259 aa18.1■□□□□ 0.49
TRIM54-201ENST00000296098 FXYD7P58549 80 aa18.1■□□□□ 0.49
TRIM54-201ENST00000296098 SAMD13Q5VXD3 122 aa18.1■□□□□ 0.49
TRIM54-201ENST00000296098 NXT2Q9NPJ8 142 aaKnown RBP18.1■□□□□ 0.49
TRIM54-201ENST00000296098 TRBV7-9A0A0J9YWB2 115 aa18.09■□□□□ 0.49
TRIM54-201ENST00000296098 LINC01546A6NGU7 62 aa18.09■□□□□ 0.49
TRIM54-201ENST00000296098 LRRC75A-AS1Q8N1F1 130 aa18.09■□□□□ 0.49
TRIM54-201ENST00000296098 LRRK2Q5S007 2527 aa18.08■□□□□ 0.49
TRIM54-201ENST00000296098 ID1P41134 155 aa18.08■□□□□ 0.49
TRIM54-201ENST00000296098 CSMD2Q7Z408 3487 aa18.08■□□□□ 0.48
TRIM54-201ENST00000296098 COL5A1-AS1Q5SY13 56 aa18.08■□□□□ 0.48
TRIM54-201ENST00000296098 APRG1Q8IVJ8 170 aa18.08■□□□□ 0.48
TRIM54-201ENST00000296098 GATA1P15976 413 aaPredicted RBP18.07■□□□□ 0.48
TRIM54-201ENST00000296098 MS4A6AQ9H2W1 248 aa18.07■□□□□ 0.48
TRIM54-201ENST00000296098 RNASE4P34096 147 aaKnown RBP18.06■□□□□ 0.48
TRIM54-201ENST00000296098 DCANP1Q8TF63 244 aa18.06■□□□□ 0.48
TRIM54-201ENST00000296098 ZNF702PQ9H963 129 aa18.06■□□□□ 0.48
TRIM54-201ENST00000296098 ASIPP42127 132 aa18.06■□□□□ 0.48
TRIM54-201ENST00000296098 OR2K2Q8NGT1 345 aa18.05■□□□□ 0.48
TRIM54-201ENST00000296098 SCRT2Q9NQ03 307 aa18.05■□□□□ 0.48
TRIM54-201ENST00000296098 LGALS9BQ3B8N2 356 aa18.05■□□□□ 0.48
TRIM54-201ENST00000296098 ANXA2RQ3ZCQ2 193 aa18.05■□□□□ 0.48
TRIM54-201ENST00000296098 LGALS9CQ6DKI2 356 aa18.05■□□□□ 0.48
TRIM54-201ENST00000296098 IFI27L1Q96BM0 104 aa18.05■□□□□ 0.48
TRIM54-201ENST00000296098 GOLT1BQ9Y3E0 138 aa18.05■□□□□ 0.48
TRIM54-201ENST00000296098 POLQO75417 2590 aa18.04■□□□□ 0.48
TRIM54-201ENST00000296098 HOXA3O43365 443 aaPredicted RBP18.04■□□□□ 0.48
TRIM54-201ENST00000296098 ELANEP08246 267 aa18.04■□□□□ 0.48
TRIM54-201ENST00000296098 LGALS1P09382 135 aaKnown RBP18.04■□□□□ 0.48
TRIM54-201ENST00000296098 S100A4P26447 101 aaKnown RBP18.04■□□□□ 0.48
TRIM54-201ENST00000296098 SLC25A34Q6PIV7 304 aa18.04■□□□□ 0.48
TRIM54-201ENST00000296098 WFDC3Q8IUB2 231 aa18.03■□□□□ 0.48
TRIM54-201ENST00000296098 Q8N8P6 123 aa18.03■□□□□ 0.48
TRIM54-201ENST00000296098 MYOZ3Q8TDC0 251 aa18.03■□□□□ 0.48
TRIM54-201ENST00000296098 TP73-AS1Q9UF72 201 aa18.03■□□□□ 0.48
TRIM54-201ENST00000296098 USP9YO00507 2555 aaPredicted RBP18.03■□□□□ 0.48
TRIM54-201ENST00000296098 MED14OSP0DP75 135 aa18.03■□□□□ 0.48
TRIM54-201ENST00000296098 NRACQ8N912 160 aa18.03■□□□□ 0.48
TRIM54-201ENST00000296098 Q96MF0 132 aa18.03■□□□□ 0.48
TRIM54-201ENST00000296098 TRAV26-2A0A0B4J265 109 aa18.02■□□□□ 0.48
TRIM54-201ENST00000296098 FCER1GP30273 86 aa18.02■□□□□ 0.48
TRIM54-201ENST00000296098 LEPP41159 167 aa18.02■□□□□ 0.48
TRIM54-201ENST00000296098 KIR3DS1Q14943 382 aa18.02■□□□□ 0.48
TRIM54-201ENST00000296098 HINT1P49773 126 aaPredicted RBP18.01■□□□□ 0.47
TRIM54-201ENST00000296098 STPG4Q8N801 248 aa18.01■□□□□ 0.47
TRIM54-201ENST00000296098 MRAP2Q96G30 205 aa18.01■□□□□ 0.47
TRIM54-201ENST00000296098 M0R381 172 aa18.01■□□□□ 0.47
TRIM54-201ENST00000296098 PRRC2AP48634 2157 aaKnown RBP18■□□□□ 0.47
TRIM54-201ENST00000296098 IGLV2-18A0A075B6J9 118 aa18■□□□□ 0.47
TRIM54-201ENST00000296098 KLLNB2CW77 178 aa18■□□□□ 0.47
TRIM54-201ENST00000296098 PHLDA3Q9Y5J5 127 aa18■□□□□ 0.47
TRIM54-201ENST00000296098 PRSS47A8MTI9 375 aa17.99■□□□□ 0.47
TRIM54-201ENST00000296098 TFPI2P48307 235 aa17.99■□□□□ 0.47
TRIM54-201ENST00000296098 DEFB125Q8N687 156 aa17.99■□□□□ 0.47
TRIM54-201ENST00000296098 IGHV4OR15-8A0A075B7B6 117 aa17.99■□□□□ 0.47
TRIM54-201ENST00000296098 A0A087WW49 117 aa17.99■□□□□ 0.47
TRIM54-201ENST00000296098 SYNJ2BPP57105 145 aa17.99■□□□□ 0.47
TRIM54-201ENST00000296098 UBE2E2Q96LR5 201 aa17.99■□□□□ 0.47
TRIM54-201ENST00000296098 LGALS9O00182 355 aa17.98■□□□□ 0.47
TRIM54-201ENST00000296098 ZNF25P17030 456 aaPredicted RBP17.98■□□□□ 0.47
TRIM54-201ENST00000296098 G0S2P27469 103 aa17.98■□□□□ 0.47
TRIM54-201ENST00000296098 RNF152Q8N8N0 203 aa17.98■□□□□ 0.47
TRIM54-201ENST00000296098 DPF1Q92782 380 aa17.98■□□□□ 0.47
TRIM54-201ENST00000296098 C18orf15Q96N68 181 aa17.98■□□□□ 0.47
TRIM54-201ENST00000296098 ZNF688P0C7X2 276 aa17.97■□□□□ 0.47
TRIM54-201ENST00000296098 PSMG4Q5JS54 123 aa17.97■□□□□ 0.47
TRIM54-201ENST00000296098 PTPN13Q12923 2485 aa17.97■□□□□ 0.47
TRIM54-201ENST00000296098 GNRH2O43555 120 aa17.96■□□□□ 0.47
TRIM54-201ENST00000296098 SPRY2O43597 315 aa17.96■□□□□ 0.47
TRIM54-201ENST00000296098 HOXD3P31249 432 aaPredicted RBP17.96■□□□□ 0.47
TRIM54-201ENST00000296098 SNRPD3P62318 126 aaKnown RBP17.96■□□□□ 0.47
TRIM54-201ENST00000296098 KRTAP1-3Q8IUG1 177 aa17.96■□□□□ 0.47
TRIM54-201ENST00000296098 TMEM158Q8WZ71 300 aa17.96■□□□□ 0.47
TRIM54-201ENST00000296098 DPH3P1Q9H4G8 78 aa17.96■□□□□ 0.47
TRIM54-201ENST00000296098 ZANQ9Y493 2812 aa17.96■□□□□ 0.47
TRIM54-201ENST00000296098 RNASE3P12724 160 aaKnown RBP17.96■□□□□ 0.47
TRIM54-201ENST00000296098 COX8AP10176 69 aa17.95■□□□□ 0.46
TRIM54-201ENST00000296098 K7EQG2 157 aa17.94■□□□□ 0.46
TRIM54-201ENST00000296098 ODF3Q96PU9 254 aa17.94■□□□□ 0.46
TRIM54-201ENST00000296098 LAGE3Q14657 143 aa17.94■□□□□ 0.46
TRIM54-201ENST00000296098 AP1S3Q96PC3 154 aa17.94■□□□□ 0.46
TRIM54-201ENST00000296098 CENPEQ02224 2701 aa17.94■□□□□ 0.46
TRIM54-201ENST00000296098 FAM159AQ6UWV7 190 aa17.93■□□□□ 0.46
TRIM54-201ENST00000296098 C14orf178Q8N769 122 aaPredicted RBP17.93■□□□□ 0.46
TRIM54-201ENST00000296098 NAV2Q8IVL1 2488 aa17.93■□□□□ 0.46
TRIM54-201ENST00000296098 CD5LO43866 347 aa17.93■□□□□ 0.46
TRIM54-201ENST00000296098 NXPH4O95158 308 aa17.93■□□□□ 0.46
TRIM54-201ENST00000296098 ANKRD39Q53RE8 183 aa17.93■□□□□ 0.46
TRIM54-201ENST00000296098 Q8N2B8 174 aa17.93■□□□□ 0.46
TRIM54-201ENST00000296098 OR1N2Q8NGR9 330 aa17.93■□□□□ 0.46
TRIM54-201ENST00000296098 TMEM208Q9BTX3 173 aa17.93■□□□□ 0.46
TRIM54-201ENST00000296098 A0A0J9YX75 114 aa17.92■□□□□ 0.46
TRIM54-201ENST00000296098 WFDC12Q8WWY7 111 aa17.92■□□□□ 0.46
TRIM54-201ENST00000296098 DUX5Q96PT3 197 aa17.92■□□□□ 0.46
TRIM54-201ENST00000296098 SMIM2Q9BVW6 85 aa17.92■□□□□ 0.46
TRIM54-201ENST00000296098 C7orf71A4D174 169 aa17.91■□□□□ 0.46
TRIM54-201ENST00000296098 MGPP08493 103 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms