RNA–Protein interactions for RNA: ENST00000640501.1

PNKP-231, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 5

Gene PNKP, Length 151 nt, Biotype non stop decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-231	ENST00000640501	NAV2	Q8IVL1	2488 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	TRAV2	A0A0B4J234	112 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501		A0A1B0GUS0	222 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	LINC01619	G3V211	115 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	BTF3	P20290	206 aa	Known RBP	6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	S100A4	P26447	101 aa	Known RBP	6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	CKS2	P33552	79 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	ASIP	P42127	132 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	SPANXN1	Q5VSR9	72 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	LCNL1	Q6ZST4	164 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	KRTAP1-3	Q8IUG1	177 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	WFDC11	Q8NEX6	87 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	C4orf3	Q8WVX3	66 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	PRELID3A	Q96N28	172 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	RCHY1	Q96PM5	261 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	AP5S1	Q9NUS5	200 aa		6.32	□□□□□ -1.4
PNKP-231	ENST00000640501	USP9Y	O00507	2555 aa	Predicted RBP	6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	TMEM213	A2RRL7	107 aa		6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	NUPR1	O60356	82 aa		6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	LEPROTL1	O95214	131 aa		6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	DDT	P30046	118 aa		6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	HOXD3	P31249	432 aa	Predicted RBP	6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	ZNF80	P51504	273 aa	Predicted RBP	6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	LINC00310	P59036	64 aa		6.31	□□□□□ -1.4
PNKP-231	ENST00000640501		Q6ZWC4	215 aa		6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	OR10AG1	Q8NH19	301 aa		6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	ZNF418	Q8TF45	676 aa	Predicted RBP	6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	MAP1LC3C	Q9BXW4	147 aa		6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	MAP1LC3A	Q9H492	121 aa		6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	YAE1D1	Q9NRH1	226 aa		6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	TMEM160	Q9NX00	188 aa		6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	CENPE	Q02224	2701 aa		6.31	□□□□□ -1.4
PNKP-231	ENST00000640501	IGKV3-7	A0A075B6H7	116 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501	IGHV4OR15-8	A0A075B7B6	117 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501		A0A087WW49	117 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501	FAM181B	A6NEQ2	426 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501	PPP1R17	O96001	155 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501	SYNJ2BP	P57105	145 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501	KHDC1L	Q5JSQ8	128 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501	FAM159A	Q6UWV7	190 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501	APRG1	Q8IVJ8	170 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501	DCANP1	Q8TF63	244 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501	TMEM70	Q9BUB7	260 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501	MS4A6A	Q9H2W1	248 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501	NXT2	Q9NPJ8	142 aa	Known RBP	6.3	□□□□□ -1.4
PNKP-231	ENST00000640501	PHLDA3	Q9Y5J5	127 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501		U3KQK5	164 aa		6.3	□□□□□ -1.4
PNKP-231	ENST00000640501	CREBBP	Q92793	2442 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	IGHV4-4	A0A075B6R2	117 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	DNAJC9-AS1	A6NH13	148 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	C2orf70	A6NJV1	201 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	HSBP1L1	C9JCN9	74 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501		D6R8Y8	96 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	SNAI2	O43623	268 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	TCF21	O43680	179 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	RNASE4	P34096	147 aa	Known RBP	6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	MRPL51	Q4U2R6	128 aa	Known RBP	6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	LBH	Q53QV2	105 aa	Predicted RBP	6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	TEX43	Q6ZNM6	134 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	FAM19A2	Q8N3H0	131 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	OR1N2	Q8NGR9	330 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	DYNLRB2	Q8TF09	96 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	C20orf173	Q96LM9	149 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	FAM19A4	Q96LR4	140 aa		6.29	□□□□□ -1.4
PNKP-231	ENST00000640501	KMT2B	Q9UMN6	2715 aa	Predicted RBP	6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	IGKV3D-20	A0A0C4DH25	116 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	IGHV1-24	A0A0C4DH33	117 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	OR4C46	A6NHA9	309 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501		K7EQG2	157 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	CSN3	P07498	182 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	RNASE1	P07998	156 aa	Known RBP	6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	C3orf79	P0CE67	100 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	SMIM17	P0DL12	118 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	CMC4	P56277	68 aa	Predicted RBP	6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	TCTEX1D4	Q5JR98	221 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	PSMG4	Q5JS54	123 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	PET117	Q6UWS5	81 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	FOXI2	Q6ZQN5	318 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	MRPL52	Q86TS9	123 aa	Known RBP	6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	WFDC3	Q8IUB2	231 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	AMN1	Q8IY45	258 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	ZFAND2A	Q8N6M9	145 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	SYT8	Q8NBV8	401 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	KLHL30-AS1	Q8NEE0	82 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	OR11H1	Q8NG94	326 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	OR9G4	Q8NGQ1	327 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	MRAP2	Q96G30	205 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	AP1S3	Q96PC3	154 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	C20orf144	Q9BQM9	153 aa		6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	ASH1L	Q9NR48	2969 aa	Known RBP	6.28	□□□□□ -1.4
PNKP-231	ENST00000640501	CRYBG3	Q68DQ2	2970 aa		6.27	□□□□□ -1.41
PNKP-231	ENST00000640501	TRAV25	A0A0B4J276	109 aa		6.27	□□□□□ -1.41
PNKP-231	ENST00000640501	KIR2DL5B	A0A0G2JN68	375 aa		6.27	□□□□□ -1.41
PNKP-231	ENST00000640501	KIR2DL5B	A0A0G2JPC4	375 aa		6.27	□□□□□ -1.41
PNKP-231	ENST00000640501		A0A0J9YX75	114 aa		6.27	□□□□□ -1.41
PNKP-231	ENST00000640501	C7orf71	A4D174	169 aa		6.27	□□□□□ -1.41
PNKP-231	ENST00000640501	LINC00587	B1AMM8	73 aa		6.27	□□□□□ -1.41
PNKP-231	ENST00000640501	KLLN	B2CW77	178 aa		6.27	□□□□□ -1.41
PNKP-231	ENST00000640501		K7EMI3	77 aa		6.27	□□□□□ -1.41
PNKP-231	ENST00000640501	CRX	O43186	299 aa	Predicted RBP	6.27	□□□□□ -1.41

Retrieved 100 of 20,778 RNA–protein pairs in 53 ms