RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PRR9Q5T870 116 aa12.61□□□□□ -0.39
CLN3-252ENST00000636907 FAM19A4Q96LR4 140 aa12.61□□□□□ -0.39
CLN3-252ENST00000636907 TMSB15BA0A087X1C1 80 aa12.6□□□□□ -0.39
CLN3-252ENST00000636907 TRAV2A0A0B4J234 112 aa12.6□□□□□ -0.39
CLN3-252ENST00000636907 FAM231BA6NCW3 169 aa12.6□□□□□ -0.39
CLN3-252ENST00000636907 CD33P20138 364 aa12.6□□□□□ -0.39
CLN3-252ENST00000636907 ZFAND2AQ8N6M9 145 aa12.6□□□□□ -0.39
CLN3-252ENST00000636907 SIGLEC8Q9NYZ4 499 aa12.6□□□□□ -0.39
CLN3-252ENST00000636907 LOC105371267A0A1B0GV96 52 aa12.59□□□□□ -0.39
CLN3-252ENST00000636907 FABP9Q0Z7S8 132 aa12.59□□□□□ -0.39
CLN3-252ENST00000636907 PGLYRP4Q96LB8 373 aa12.59□□□□□ -0.39
CLN3-252ENST00000636907 TRAPPC1Q9Y5R8 145 aa12.59□□□□□ -0.39
CLN3-252ENST00000636907 A0A0J9YX75 114 aa12.58□□□□□ -0.4
CLN3-252ENST00000636907 J3KRW8 73 aa12.58□□□□□ -0.4
CLN3-252ENST00000636907 HIST1H2BKO60814 126 aa12.58□□□□□ -0.4
CLN3-252ENST00000636907 HIST1H2BJP06899 126 aa12.58□□□□□ -0.4
CLN3-252ENST00000636907 TRGC1P0CF51 173 aa12.58□□□□□ -0.4
CLN3-252ENST00000636907 HIST1H2BOP23527 126 aa12.58□□□□□ -0.4
CLN3-252ENST00000636907 HIST1H2BBP33778 126 aa12.58□□□□□ -0.4
CLN3-252ENST00000636907 FOXA3P55318 350 aaPredicted RBP12.58□□□□□ -0.4
CLN3-252ENST00000636907 HIST1H2BDP58876 126 aa12.58□□□□□ -0.4
CLN3-252ENST00000636907 HIST1H2BCP62807 126 aa12.58□□□□□ -0.4
CLN3-252ENST00000636907 HIST2H2BEQ16778 126 aa12.58□□□□□ -0.4
CLN3-252ENST00000636907 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.58□□□□□ -0.4
CLN3-252ENST00000636907 HIST1H2BHQ93079 126 aa12.58□□□□□ -0.4
CLN3-252ENST00000636907 HIST1H2BNQ99877 126 aa12.58□□□□□ -0.4
CLN3-252ENST00000636907 HIST1H2BMQ99879 126 aa12.58□□□□□ -0.4
CLN3-252ENST00000636907 SNURFLB1AK76 121 aa12.57□□□□□ -0.4
CLN3-252ENST00000636907 ORM1P02763 201 aa12.57□□□□□ -0.4
CLN3-252ENST00000636907 Q6ZQT7 251 aa12.57□□□□□ -0.4
CLN3-252ENST00000636907 GNB1LQ9BYB4 327 aa12.57□□□□□ -0.4
CLN3-252ENST00000636907 TRAV25A0A0B4J276 109 aa12.57□□□□□ -0.4
CLN3-252ENST00000636907 TRBV7-9A0A0J9YWB2 115 aa12.57□□□□□ -0.4
CLN3-252ENST00000636907 LINC01559Q495D7 138 aa12.57□□□□□ -0.4
CLN3-252ENST00000636907 EBLN2Q6P2I7 272 aa12.57□□□□□ -0.4
CLN3-252ENST00000636907 TMEM136Q6ZRR5 245 aa12.57□□□□□ -0.4
CLN3-252ENST00000636907 ZNF575Q86XF7 245 aa12.57□□□□□ -0.4
CLN3-252ENST00000636907 SAV1Q9H4B6 383 aaPredicted RBP12.57□□□□□ -0.4
CLN3-252ENST00000636907 C11orf21Q9P2W6 132 aa12.57□□□□□ -0.4
CLN3-252ENST00000636907 XKRY2A2RUG3 117 aa12.56□□□□□ -0.4
CLN3-252ENST00000636907 CRISP2P16562 243 aa12.56□□□□□ -0.4
CLN3-252ENST00000636907 DEFB131AP59861 70 aa12.56□□□□□ -0.4
CLN3-252ENST00000636907 RPS20P60866 119 aaKnown RBP12.56□□□□□ -0.4
CLN3-252ENST00000636907 KIR3DS1Q14943 382 aa12.56□□□□□ -0.4
CLN3-252ENST00000636907 WDR73Q6P4I2 378 aa12.56□□□□□ -0.4
CLN3-252ENST00000636907 FOXI2Q6ZQN5 318 aa12.56□□□□□ -0.4
CLN3-252ENST00000636907 ATP5L2Q7Z4Y8 100 aa12.56□□□□□ -0.4
CLN3-252ENST00000636907 APRG1Q8IVJ8 170 aa12.56□□□□□ -0.4
CLN3-252ENST00000636907 WNK1Q9H4A3 2382 aa12.56□□□□□ -0.4
CLN3-252ENST00000636907 A0A1B0GXF2 115 aa12.55□□□□□ -0.4
CLN3-252ENST00000636907 SAP30O75446 220 aa12.55□□□□□ -0.4
CLN3-252ENST00000636907 GPX1P07203 203 aa12.55□□□□□ -0.4
CLN3-252ENST00000636907 COX19Q49B96 90 aa12.55□□□□□ -0.4
CLN3-252ENST00000636907 RASL11AQ6T310 242 aa12.55□□□□□ -0.4
CLN3-252ENST00000636907 SPAG8Q99932 426 aaPredicted RBP12.55□□□□□ -0.4
CLN3-252ENST00000636907 MRPL18Q9H0U6 180 aaKnown RBP12.55□□□□□ -0.4
CLN3-252ENST00000636907 ZNF256Q9Y2P7 627 aaPredicted RBP12.55□□□□□ -0.4
CLN3-252ENST00000636907 IGKV3D-20A0A0C4DH25 116 aa12.54□□□□□ -0.4
CLN3-252ENST00000636907 OR4C46A6NHA9 309 aa12.54□□□□□ -0.4
CLN3-252ENST00000636907 RAB4BP61018 213 aa12.54□□□□□ -0.4
CLN3-252ENST00000636907 MAP6D1Q9H9H5 199 aa12.54□□□□□ -0.4
CLN3-252ENST00000636907 GRIFINA4D1Z8 144 aa12.54□□□□□ -0.4
CLN3-252ENST00000636907 DUSP14O95147 198 aaKnown RBP12.54□□□□□ -0.4
CLN3-252ENST00000636907 IGKV3-20P01619 116 aa12.54□□□□□ -0.4
CLN3-252ENST00000636907 PF4P02776 101 aa12.54□□□□□ -0.4
CLN3-252ENST00000636907 MT-ND6P03923 174 aa12.54□□□□□ -0.4
CLN3-252ENST00000636907 S100A6P06703 90 aa12.54□□□□□ -0.4
CLN3-252ENST00000636907 RNASE4P34096 147 aaKnown RBP12.54□□□□□ -0.4
CLN3-252ENST00000636907 CAMPP49913 170 aa12.54□□□□□ -0.4
CLN3-252ENST00000636907 Q6AWC8 147 aa12.54□□□□□ -0.4
CLN3-252ENST00000636907 ODF3Q96PU9 254 aa12.54□□□□□ -0.4
CLN3-252ENST00000636907 TPPP3Q9BW30 176 aa12.54□□□□□ -0.4
CLN3-252ENST00000636907 KNCNA6PVL3 124 aa12.53□□□□□ -0.4
CLN3-252ENST00000636907 KLLNB2CW77 178 aa12.53□□□□□ -0.4
CLN3-252ENST00000636907 ARMS2P0C7Q2 107 aa12.53□□□□□ -0.4
CLN3-252ENST00000636907 SNRPEP62304 92 aaKnown RBP12.53□□□□□ -0.4
CLN3-252ENST00000636907 HBBP68871 147 aa12.53□□□□□ -0.4
CLN3-252ENST00000636907 LINC00482Q8N8I6 264 aa12.53□□□□□ -0.4
CLN3-252ENST00000636907 NIPBLQ6KC79 2804 aaeCLIP12.53□□□□□ -0.4
CLN3-252ENST00000636907 TRAV21A0A0B4J279 112 aa12.52□□□□□ -0.4
CLN3-252ENST00000636907 A0A1B0GUT8 65 aa12.52□□□□□ -0.4
CLN3-252ENST00000636907 HLA-DQA1P01909 254 aa12.52□□□□□ -0.4
CLN3-252ENST00000636907 IGLC6P0CF74 106 aa12.52□□□□□ -0.4
CLN3-252ENST00000636907 NDUFA6P56556 154 aa12.52□□□□□ -0.4
CLN3-252ENST00000636907 ZNF124Q15973 351 aa12.52□□□□□ -0.4
CLN3-252ENST00000636907 LYZL1Q6UWQ5 148 aa12.52□□□□□ -0.4
CLN3-252ENST00000636907 CITED1Q99966 193 aa12.52□□□□□ -0.4
CLN3-252ENST00000636907 C5orf52A6NGY3 159 aa12.51□□□□□ -0.41
CLN3-252ENST00000636907 IGLV1-51P01701 117 aa12.51□□□□□ -0.41
CLN3-252ENST00000636907 LEPP41159 167 aa12.51□□□□□ -0.41
CLN3-252ENST00000636907 FER1L6-AS1Q8NA97 138 aa12.51□□□□□ -0.41
CLN3-252ENST00000636907 HLA-DRB4P13762 266 aa12.51□□□□□ -0.41
CLN3-252ENST00000636907 AMTNQ6UX39 209 aa12.51□□□□□ -0.41
CLN3-252ENST00000636907 NAGKQ9UJ70 344 aa12.51□□□□□ -0.41
CLN3-252ENST00000636907 HLA-DRB4X5D2U9 266 aa12.51□□□□□ -0.41
CLN3-252ENST00000636907 JMJD1CQ15652 2540 aa12.5□□□□□ -0.41
CLN3-252ENST00000636907 CTRLP40313 264 aa12.5□□□□□ -0.41
CLN3-252ENST00000636907 SLAQ13239 276 aa12.5□□□□□ -0.41
CLN3-252ENST00000636907 RIGQ13278 110 aa12.5□□□□□ -0.41
CLN3-252ENST00000636907 PRR31Q5SQ13 230 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms