RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CEP192Q8TEP8 1941 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 TECTAO75443 2155 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 IGHV3OR16-10A0A075B7F0 116 aa8.69□□□□□ -1.02
CLN3-244ENST00000636147 C1orf122Q6ZSJ8 110 aa8.69□□□□□ -1.02
CLN3-244ENST00000636147 COL5A1P20908 1838 aaPredicted RBP8.69□□□□□ -1.02
CLN3-244ENST00000636147 C3orf36Q3SXR2 165 aa8.69□□□□□ -1.02
CLN3-244ENST00000636147 PRSS33Q8NF86 280 aa8.69□□□□□ -1.02
CLN3-244ENST00000636147 A8MWV9 139 aa8.69□□□□□ -1.02
CLN3-244ENST00000636147 SNCGO76070 127 aa8.69□□□□□ -1.02
CLN3-244ENST00000636147 C15orf32Q32M92 178 aa8.69□□□□□ -1.02
CLN3-244ENST00000636147 TEX29Q8N6K0 151 aa8.69□□□□□ -1.02
CLN3-244ENST00000636147 RAX2Q96IS3 184 aa8.69□□□□□ -1.02
CLN3-244ENST00000636147 AGRNO00468 2067 aa8.69□□□□□ -1.02
CLN3-244ENST00000636147 H7C1H1 209 aa8.68□□□□□ -1.02
CLN3-244ENST00000636147 IGLV2-23P01705 113 aa8.68□□□□□ -1.02
CLN3-244ENST00000636147 WT1P19544 449 aaPredicted RBP8.68□□□□□ -1.02
CLN3-244ENST00000636147 ANXA2RQ3ZCQ2 193 aa8.68□□□□□ -1.02
CLN3-244ENST00000636147 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.68□□□□□ -1.02
CLN3-244ENST00000636147 IGHV4-39P01824 125 aa8.68□□□□□ -1.02
CLN3-244ENST00000636147 SLC25A16P16260 332 aa8.68□□□□□ -1.02
CLN3-244ENST00000636147 TEX36Q5VZQ5 186 aa8.68□□□□□ -1.02
CLN3-244ENST00000636147 NEGR1Q7Z3B1 354 aa8.68□□□□□ -1.02
CLN3-244ENST00000636147 CDX4O14627 284 aaPredicted RBP8.68□□□□□ -1.02
CLN3-244ENST00000636147 HLA-DRB4P13762 266 aa8.68□□□□□ -1.02
CLN3-244ENST00000636147 PLNP26678 52 aa8.68□□□□□ -1.02
CLN3-244ENST00000636147 RNASE4P34096 147 aaKnown RBP8.68□□□□□ -1.02
CLN3-244ENST00000636147 RPL13AP40429 203 aaKnown RBP8.68□□□□□ -1.02
CLN3-244ENST00000636147 FOXI2Q6ZQN5 318 aa8.68□□□□□ -1.02
CLN3-244ENST00000636147 KIR2DL4Q99706 377 aa8.68□□□□□ -1.02
CLN3-244ENST00000636147 HLA-DRB4X5D2U9 266 aa8.68□□□□□ -1.02
CLN3-244ENST00000636147 TRAV2A0A0B4J234 112 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 MYCNOSP40205 109 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 C5orf64Q2M2E5 130 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 B9A039 149 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 K7EM74 188 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 CRIP1P50238 77 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 PDE6HQ13956 83 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 C22orf34Q6ZV56 151 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 FAM57AQ8TBR7 257 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 FAM215AQ9Y5M1 114 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 OTOGLQ3ZCN5 2332 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 FGF6P10767 208 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 ASIPP42127 132 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 C7orf69Q9H7B7 122 aa8.67□□□□□ -1.02
CLN3-244ENST00000636147 PTPN13Q12923 2485 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 K7EIM0 57 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 ODF1Q14990 250 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 ORMDL2Q53FV1 153 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 Q8N8P6 123 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 SPAG8Q99932 426 aaPredicted RBP8.66□□□□□ -1.02
CLN3-244ENST00000636147 PRADC1Q9BSG0 188 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 TRAV26-1A0A087WT03 109 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 IGHV3-11P01762 117 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 SRD5A1P18405 259 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 DYNAPQ8N1N2 210 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 C20orf78Q9BR46 151 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 SPRY4Q9C004 299 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 I3L2K1 104 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 RRN3P1Q2M238 152 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 PTH2Q96A98 100 aa8.66□□□□□ -1.02
CLN3-244ENST00000636147 REV3LO60673 3130 aa8.65□□□□□ -1.02
CLN3-244ENST00000636147 A0A0G2JNJ9 132 aa8.65□□□□□ -1.02
CLN3-244ENST00000636147 ZNF56Q15929 161 aa8.65□□□□□ -1.02
CLN3-244ENST00000636147 SEM1Q6ZVN7 128 aa8.65□□□□□ -1.02
CLN3-244ENST00000636147 LINC00311Q8N616 119 aa8.65□□□□□ -1.02
CLN3-244ENST00000636147 DPF1Q92782 380 aa8.65□□□□□ -1.02
CLN3-244ENST00000636147 Q9UFV3 132 aa8.65□□□□□ -1.02
CLN3-244ENST00000636147 MYO9AB2RTY4 2548 aa8.65□□□□□ -1.02
CLN3-244ENST00000636147 TRGV3P03979 118 aa8.65□□□□□ -1.02
CLN3-244ENST00000636147 CRYGCP07315 174 aa8.65□□□□□ -1.02
CLN3-244ENST00000636147 PF4V1P10720 104 aa8.65□□□□□ -1.02
CLN3-244ENST00000636147 PTPRQQ9UMZ3 2332 aa8.65□□□□□ -1.03
CLN3-244ENST00000636147 ZNF80P51504 273 aaPredicted RBP8.65□□□□□ -1.03
CLN3-244ENST00000636147 MYMXA0A1B0GTQ4 84 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 C9JAW5 83 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 GAS8-AS1O95177 125 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 ZFAND6Q6FIF0 208 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 C2orf66Q6UXQ4 117 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 MRAP2Q96G30 205 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 E7EQL1 145 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 F8VRH5 84 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 GAGE2BQ13066 116 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 GAGE2EQ4V326 116 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 KLHL30-AS1Q8NEE0 82 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 CFHR4Q92496 578 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 GAGE2DQ9UEU5 116 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 TEX22C9J3V5 150 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 PRAC2D3DTV9 90 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 FAM159AQ6UWV7 190 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 ABHD17AQ96GS6 310 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 SLC50A1Q9BRV3 221 aa8.64□□□□□ -1.03
CLN3-244ENST00000636147 IGLV2-11P01706 119 aa8.63□□□□□ -1.03
CLN3-244ENST00000636147 ZNF672Q499Z4 452 aaPredicted RBP8.63□□□□□ -1.03
CLN3-244ENST00000636147 NPC2P61916 151 aa8.63□□□□□ -1.03
CLN3-244ENST00000636147 LY6EQ16553 131 aa8.63□□□□□ -1.03
CLN3-244ENST00000636147 UFSP1Q6NVU6 142 aa8.63□□□□□ -1.03
CLN3-244ENST00000636147 NUP37Q8NFH4 326 aa8.63□□□□□ -1.03
CLN3-244ENST00000636147 EEF1AKMT3Q96AZ1 226 aa8.63□□□□□ -1.03
CLN3-244ENST00000636147 INSL3P51460 131 aa8.62□□□□□ -1.03
CLN3-244ENST00000636147 SUMO2P61956 95 aaKnown RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms