RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 IGHV7-4-1A0A0J9YVY3 117 aa15.4■□□□□ 0.06
CLN3-230ENST00000568076 HIST1H1AQ02539 215 aaPredicted RBP15.4■□□□□ 0.06
CLN3-230ENST00000568076 DEFB113Q30KQ7 82 aa15.4■□□□□ 0.06
CLN3-230ENST00000568076 MIEN1Q9BRT3 115 aa15.4■□□□□ 0.06
CLN3-230ENST00000568076 EREGO14944 169 aa15.4■□□□□ 0.06
CLN3-230ENST00000568076 EDN2P20800 178 aa15.4■□□□□ 0.06
CLN3-230ENST00000568076 FOXE3Q13461 319 aa15.4■□□□□ 0.06
CLN3-230ENST00000568076 SPATA45Q537H7 98 aa15.4■□□□□ 0.06
CLN3-230ENST00000568076 RHPN1-AS1Q9BWJ2 59 aa15.4■□□□□ 0.06
CLN3-230ENST00000568076 PEF1Q9UBV8 284 aaKnown RBP15.4■□□□□ 0.06
CLN3-230ENST00000568076 CR1P17927 2039 aa15.39■□□□□ 0.05
CLN3-230ENST00000568076 LEPROTL1O95214 131 aa15.39■□□□□ 0.05
CLN3-230ENST00000568076 DEFB1P60022 68 aa15.39■□□□□ 0.05
CLN3-230ENST00000568076 PRR9Q5T870 116 aa15.39■□□□□ 0.05
CLN3-230ENST00000568076 TMEM70Q9BUB7 260 aa15.39■□□□□ 0.05
CLN3-230ENST00000568076 SELENOKQ9Y6D0 94 aa15.39■□□□□ 0.05
CLN3-230ENST00000568076 MAJINQ3KP22 176 aa15.38■□□□□ 0.05
CLN3-230ENST00000568076 Q5PR19 223 aa15.38■□□□□ 0.05
CLN3-230ENST00000568076 DAZ1Q9NQZ3 744 aaKnown RBP15.38■□□□□ 0.05
CLN3-230ENST00000568076 BEX4Q9NWD9 120 aaPredicted RBP15.38■□□□□ 0.05
CLN3-230ENST00000568076 ZNF705AQ6ZN79 300 aaPredicted RBP15.38■□□□□ 0.05
CLN3-230ENST00000568076 ORMDL3Q8N138 153 aa15.38■□□□□ 0.05
CLN3-230ENST00000568076 PRELID3AQ96N28 172 aa15.38■□□□□ 0.05
CLN3-230ENST00000568076 TMEM191AQ9H0A3 160 aa15.38■□□□□ 0.05
CLN3-230ENST00000568076 CRXO43186 299 aaPredicted RBP15.37■□□□□ 0.05
CLN3-230ENST00000568076 RAB4AP20338 218 aa15.37■□□□□ 0.05
CLN3-230ENST00000568076 IFI27P40305 119 aaPredicted RBP15.37■□□□□ 0.05
CLN3-230ENST00000568076 FAM106AQ4KMX7 169 aa15.37■□□□□ 0.05
CLN3-230ENST00000568076 SNHG12Q9BXW3 62 aa15.37■□□□□ 0.05
CLN3-230ENST00000568076 AP5S1Q9NUS5 200 aa15.37■□□□□ 0.05
CLN3-230ENST00000568076 ABCA12Q86UK0 2595 aa15.37■□□□□ 0.05
CLN3-230ENST00000568076 IGKV3-7A0A075B6H7 116 aa15.36■□□□□ 0.05
CLN3-230ENST00000568076 SMKR1H3BMG3 65 aa15.36■□□□□ 0.05
CLN3-230ENST00000568076 RPL11P62913 178 aaKnown RBP15.36■□□□□ 0.05
CLN3-230ENST00000568076 Q6YL49 198 aa15.36■□□□□ 0.05
CLN3-230ENST00000568076 PRSS3P2Q8NHM4 247 aa15.36■□□□□ 0.05
CLN3-230ENST00000568076 RNF185Q96GF1 192 aa15.36■□□□□ 0.05
CLN3-230ENST00000568076 C2orf88Q9BSF0 95 aa15.36■□□□□ 0.05
CLN3-230ENST00000568076 SIGLEC8Q9NYZ4 499 aa15.36■□□□□ 0.05
CLN3-230ENST00000568076 SMPXQ9UHP9 88 aa15.36■□□□□ 0.05
CLN3-230ENST00000568076 VPREB3Q9UKI3 123 aa15.36■□□□□ 0.05
CLN3-230ENST00000568076 SYS1-DBNDD2H3BUS1 97 aa15.36■□□□□ 0.05
CLN3-230ENST00000568076 OR5AL1P0C617 328 aa15.36■□□□□ 0.05
CLN3-230ENST00000568076 LURAP1LQ8IV03 231 aa15.36■□□□□ 0.05
CLN3-230ENST00000568076 LOC389332A0A1B0GUA5 103 aa15.35■□□□□ 0.05
CLN3-230ENST00000568076 CYB5R2Q6BCY4 276 aa15.35■□□□□ 0.05
CLN3-230ENST00000568076 FA2HQ7L5A8 372 aa15.35■□□□□ 0.05
CLN3-230ENST00000568076 LRRC75A-AS1Q8N1F1 130 aa15.35■□□□□ 0.05
CLN3-230ENST00000568076 LENEPQ9Y5L5 61 aa15.35■□□□□ 0.05
CLN3-230ENST00000568076 LBHQ53QV2 105 aaPredicted RBP15.35■□□□□ 0.05
CLN3-230ENST00000568076 ZFAND2AQ8N6M9 145 aa15.35■□□□□ 0.05
CLN3-230ENST00000568076 LINC00477Q96M19 166 aa15.35■□□□□ 0.05
CLN3-230ENST00000568076 NAV2Q8IVL1 2488 aa15.34■□□□□ 0.05
CLN3-230ENST00000568076 A0A1B0GV90 55 aa15.34■□□□□ 0.05
CLN3-230ENST00000568076 K7EMT4 169 aa15.34■□□□□ 0.05
CLN3-230ENST00000568076 OVOL1O14753 267 aa15.34■□□□□ 0.05
CLN3-230ENST00000568076 NCR2O95944 276 aa15.34■□□□□ 0.05
CLN3-230ENST00000568076 RPLP1P05386 114 aaKnown RBP15.34■□□□□ 0.05
CLN3-230ENST00000568076 MXRA5Q9NR99 2828 aa15.34■□□□□ 0.05
CLN3-230ENST00000568076 TMEM89A2RUT3 159 aa15.33■□□□□ 0.05
CLN3-230ENST00000568076 F6UB75 175 aa15.33■□□□□ 0.05
CLN3-230ENST00000568076 NPYP01303 97 aa15.33■□□□□ 0.05
CLN3-230ENST00000568076 IGLC3P0DOY3 106 aa15.33■□□□□ 0.05
CLN3-230ENST00000568076 SRD5A1P18405 259 aa15.33■□□□□ 0.05
CLN3-230ENST00000568076 CKS2P33552 79 aa15.33■□□□□ 0.05
CLN3-230ENST00000568076 KRTAP1-3Q8IUG1 177 aa15.33■□□□□ 0.05
CLN3-230ENST00000568076 OR10J6PQ8NGY7 276 aa15.33■□□□□ 0.05
CLN3-230ENST00000568076 Q96MF0 132 aa15.33■□□□□ 0.05
CLN3-230ENST00000568076 A0A096LNJ9 63 aa15.33■□□□□ 0.04
CLN3-230ENST00000568076 GAS8-AS1O95177 125 aa15.33■□□□□ 0.04
CLN3-230ENST00000568076 OR10AG1Q8NH19 301 aa15.33■□□□□ 0.04
CLN3-230ENST00000568076 ZNF702PQ9H963 129 aa15.33■□□□□ 0.04
CLN3-230ENST00000568076 TRAV9-2A0A087WT02 112 aa15.32■□□□□ 0.04
CLN3-230ENST00000568076 J3KRW8 73 aa15.32■□□□□ 0.04
CLN3-230ENST00000568076 HOXA3O43365 443 aaPredicted RBP15.32■□□□□ 0.04
CLN3-230ENST00000568076 PRSS57Q6UWY2 283 aa15.32■□□□□ 0.04
CLN3-230ENST00000568076 M0R143 59 aa15.31■□□□□ 0.04
CLN3-230ENST00000568076 FAM19A4Q96LR4 140 aa15.31■□□□□ 0.04
CLN3-230ENST00000568076 HSPB8Q9UJY1 196 aa15.31■□□□□ 0.04
CLN3-230ENST00000568076 TIMM8BQ9Y5J9 83 aaPredicted RBP15.31■□□□□ 0.04
CLN3-230ENST00000568076 OR8A1Q8NGG7 326 aa15.31■□□□□ 0.04
CLN3-230ENST00000568076 OR4C46A6NHA9 309 aa15.3■□□□□ 0.04
CLN3-230ENST00000568076 MCRIP2Q9BUT9 160 aaKnown RBP15.3■□□□□ 0.04
CLN3-230ENST00000568076 MAP1LC3CQ9BXW4 147 aa15.3■□□□□ 0.04
CLN3-230ENST00000568076 APCP25054 2843 aa15.3■□□□□ 0.04
CLN3-230ENST00000568076 PRRC2AP48634 2157 aaKnown RBP15.3■□□□□ 0.04
CLN3-230ENST00000568076 IGLL1P15814 213 aa15.29■□□□□ 0.04
CLN3-230ENST00000568076 DCANP1Q8TF63 244 aa15.29■□□□□ 0.04
CLN3-230ENST00000568076 ZNF747Q9BV97 191 aa15.29■□□□□ 0.04
CLN3-230ENST00000568076 SNAI2O43623 268 aa15.29■□□□□ 0.04
CLN3-230ENST00000568076 MYOZ3Q8TDC0 251 aa15.29■□□□□ 0.04
CLN3-230ENST00000568076 UQCR10Q9UDW1 63 aa15.29■□□□□ 0.04
CLN3-230ENST00000568076 UFC1Q9Y3C8 167 aa15.29■□□□□ 0.04
CLN3-230ENST00000568076 TEX15Q9BXT5 2789 aa15.28■□□□□ 0.04
CLN3-230ENST00000568076 KIR3DS1Q14943 382 aa15.28■□□□□ 0.04
CLN3-230ENST00000568076 PET117Q6UWS5 81 aa15.28■□□□□ 0.04
CLN3-230ENST00000568076 EVI2AP22794 236 aa15.27■□□□□ 0.04
CLN3-230ENST00000568076 KLHDC1Q8N7A1 406 aa15.27■□□□□ 0.04
CLN3-230ENST00000568076 H3BVH4 76 aa15.27■□□□□ 0.03
CLN3-230ENST00000568076 TCF21O43680 179 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 239.7 ms