RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 BTN1A1Q13410 526 aa12.41□□□□□ -0.42
CLN3-217ENST00000565354 PMS2P11Q13670 270 aa12.41□□□□□ -0.42
CLN3-217ENST00000565354 CYB561D1Q8N8Q1 229 aa12.41□□□□□ -0.42
CLN3-217ENST00000565354 FAM19A4Q96LR4 140 aa12.41□□□□□ -0.42
CLN3-217ENST00000565354 ATG101Q9BSB4 218 aa12.41□□□□□ -0.42
CLN3-217ENST00000565354 BOLA1Q9Y3E2 137 aa12.41□□□□□ -0.42
CLN3-217ENST00000565354 LENEPQ9Y5L5 61 aa12.41□□□□□ -0.42
CLN3-217ENST00000565354 TRAV8-1A0A0A6YYK1 113 aa12.4□□□□□ -0.42
CLN3-217ENST00000565354 KLLNB2CW77 178 aa12.4□□□□□ -0.42
CLN3-217ENST00000565354 F6UZH7 168 aa12.4□□□□□ -0.42
CLN3-217ENST00000565354 ALKAL2Q6UX46 152 aa12.4□□□□□ -0.42
CLN3-217ENST00000565354 CCDC28AQ8IWP9 274 aa12.4□□□□□ -0.42
CLN3-217ENST00000565354 SGK494Q96LW2 274 aa12.4□□□□□ -0.42
CLN3-217ENST00000565354 ARL2-SNX15V9GYD0 113 aa12.4□□□□□ -0.42
CLN3-217ENST00000565354 RYR1P21817 5038 aa12.4□□□□□ -0.42
CLN3-217ENST00000565354 NUPR2A6NF83 97 aa12.39□□□□□ -0.43
CLN3-217ENST00000565354 PAGE4O60829 102 aa12.39□□□□□ -0.43
CLN3-217ENST00000565354 ZFAND2AQ8N6M9 145 aa12.39□□□□□ -0.43
CLN3-217ENST00000565354 FBLL1A6NHQ2 334 aaKnown RBP12.38□□□□□ -0.43
CLN3-217ENST00000565354 PEX7O00628 323 aa12.38□□□□□ -0.43
CLN3-217ENST00000565354 NANOS2P60321 138 aaKnown RBP12.38□□□□□ -0.43
CLN3-217ENST00000565354 PRNTQ86SH4 94 aa12.38□□□□□ -0.43
CLN3-217ENST00000565354 TMEM75Q8N9X5 138 aa12.38□□□□□ -0.43
CLN3-217ENST00000565354 HIST1H2BAQ96A08 127 aa12.38□□□□□ -0.43
CLN3-217ENST00000565354 C16orf74Q96GX8 76 aa12.38□□□□□ -0.43
CLN3-217ENST00000565354 PYGO2Q9BRQ0 406 aa12.38□□□□□ -0.43
CLN3-217ENST00000565354 TREM1Q9NP99 234 aa12.38□□□□□ -0.43
CLN3-217ENST00000565354 MANBALQ9NQG1 85 aa12.38□□□□□ -0.43
CLN3-217ENST00000565354 PSG8Q9UQ74 426 aa12.38□□□□□ -0.43
CLN3-217ENST00000565354 TEX48A0A1B0GUV7 120 aa12.37□□□□□ -0.43
CLN3-217ENST00000565354 RGS13O14921 159 aa12.37□□□□□ -0.43
CLN3-217ENST00000565354 IFNA1P01562 189 aa12.37□□□□□ -0.43
CLN3-217ENST00000565354 PRM2P04554 102 aa12.37□□□□□ -0.43
CLN3-217ENST00000565354 SPART-AS1P0CW21 52 aa12.37□□□□□ -0.43
CLN3-217ENST00000565354 ATP5G3P48201 142 aa12.37□□□□□ -0.43
CLN3-217ENST00000565354 FLI1Q01543 452 aaPredicted RBP12.37□□□□□ -0.43
CLN3-217ENST00000565354 PRR9Q5T870 116 aa12.37□□□□□ -0.43
CLN3-217ENST00000565354 TCEAL7Q9BRU2 100 aa12.37□□□□□ -0.43
CLN3-217ENST00000565354 GNG13Q9P2W3 67 aa12.37□□□□□ -0.43
CLN3-217ENST00000565354 TRAV1-1A0A0B4J248 108 aa12.36□□□□□ -0.43
CLN3-217ENST00000565354 AZU1P20160 251 aa12.36□□□□□ -0.43
CLN3-217ENST00000565354 AKR1C3P42330 323 aa12.36□□□□□ -0.43
CLN3-217ENST00000565354 UBE2G1P62253 170 aa12.36□□□□□ -0.43
CLN3-217ENST00000565354 CEMP1Q6PRD7 247 aaPredicted RBP12.36□□□□□ -0.43
CLN3-217ENST00000565354 ZNF493Q6ZR52 646 aa12.36□□□□□ -0.43
CLN3-217ENST00000565354 CELA1Q9UNI1 258 aa12.36□□□□□ -0.43
CLN3-217ENST00000565354 TRAV34A0A0B4J273 112 aa12.35□□□□□ -0.43
CLN3-217ENST00000565354 CBY3A6NI87 242 aa12.35□□□□□ -0.43
CLN3-217ENST00000565354 BLOC1S1P78537 153 aa12.35□□□□□ -0.43
CLN3-217ENST00000565354 FAM222AQ5U5X8 452 aa12.35□□□□□ -0.43
CLN3-217ENST00000565354 EIF4E3Q8N5X7 224 aaKnown RBP12.35□□□□□ -0.43
CLN3-217ENST00000565354 TMEM263Q8WUH6 116 aaKnown RBP12.35□□□□□ -0.43
CLN3-217ENST00000565354 SNURFLB1AK76 121 aa12.34□□□□□ -0.43
CLN3-217ENST00000565354 C11orf94C9JXX5 98 aa12.34□□□□□ -0.43
CLN3-217ENST00000565354 ZNF324O75467 553 aaPredicted RBP12.34□□□□□ -0.43
CLN3-217ENST00000565354 SAPCD1Q5SSQ6 148 aa12.34□□□□□ -0.43
CLN3-217ENST00000565354 LINC00479Q96M42 142 aa12.34□□□□□ -0.43
CLN3-217ENST00000565354 KIAA1109Q2LD37 5005 aa12.33□□□□□ -0.43
CLN3-217ENST00000565354 IGHV1OR15-1A0A075B7D0 117 aa12.33□□□□□ -0.44
CLN3-217ENST00000565354 TRAV21A0A0B4J279 112 aa12.33□□□□□ -0.44
CLN3-217ENST00000565354 CCL20P78556 96 aa12.33□□□□□ -0.44
CLN3-217ENST00000565354 SMUG1Q53HV7 270 aa12.33□□□□□ -0.44
CLN3-217ENST00000565354 Q6AWC8 147 aa12.33□□□□□ -0.44
CLN3-217ENST00000565354 FAM159AQ6UWV7 190 aa12.33□□□□□ -0.44
CLN3-217ENST00000565354 ZNF767PQ75MW2 155 aa12.33□□□□□ -0.44
CLN3-217ENST00000565354 ZNF680Q8NEM1 530 aa12.33□□□□□ -0.44
CLN3-217ENST00000565354 PHLDA1Q8WV24 401 aaPredicted RBP12.33□□□□□ -0.44
CLN3-217ENST00000565354 FMC1Q96HJ9 113 aa12.33□□□□□ -0.44
CLN3-217ENST00000565354 DKK2Q9UBU2 259 aa12.33□□□□□ -0.44
CLN3-217ENST00000565354 NAGKQ9UJ70 344 aa12.33□□□□□ -0.44
CLN3-217ENST00000565354 KLK5Q9Y337 293 aaPredicted RBP12.33□□□□□ -0.44
CLN3-217ENST00000565354 TIMM8BQ9Y5J9 83 aaPredicted RBP12.33□□□□□ -0.44
CLN3-217ENST00000565354 LYRM9A8MSI8 78 aa12.32□□□□□ -0.44
CLN3-217ENST00000565354 DAD1P61803 113 aa12.32□□□□□ -0.44
CLN3-217ENST00000565354 MUC21Q5SSG8 566 aa12.32□□□□□ -0.44
CLN3-217ENST00000565354 Q86TA4 180 aa12.32□□□□□ -0.44
CLN3-217ENST00000565354 RNASE8Q8TDE3 154 aaKnown RBP12.32□□□□□ -0.44
CLN3-217ENST00000565354 TVP23CQ96ET8 276 aa12.32□□□□□ -0.44
CLN3-217ENST00000565354 C8orf49Q96NF6 230 aa12.32□□□□□ -0.44
CLN3-217ENST00000565354 SCO2A0A1W2PP80 73 aa12.31□□□□□ -0.44
CLN3-217ENST00000565354 GCGP01275 180 aa12.31□□□□□ -0.44
CLN3-217ENST00000565354 IGLV2-11P01706 119 aa12.31□□□□□ -0.44
CLN3-217ENST00000565354 Q6ZTC4 211 aa12.31□□□□□ -0.44
CLN3-217ENST00000565354 TXNDC17Q9BRA2 123 aa12.31□□□□□ -0.44
CLN3-217ENST00000565354 LINC00467Q9BRT7 94 aa12.31□□□□□ -0.44
CLN3-217ENST00000565354 TRAV10A0A0B4J240 114 aa12.3□□□□□ -0.44
CLN3-217ENST00000565354 TAGLN2P37802 199 aaKnown RBP12.3□□□□□ -0.44
CLN3-217ENST00000565354 C12orf74Q32Q52 190 aa12.3□□□□□ -0.44
CLN3-217ENST00000565354 ANXA2RQ3ZCQ2 193 aa12.3□□□□□ -0.44
CLN3-217ENST00000565354 LGALS9CQ6DKI2 356 aa12.3□□□□□ -0.44
CLN3-217ENST00000565354 Q6ZQT7 251 aa12.3□□□□□ -0.44
CLN3-217ENST00000565354 NOP10Q9NPE3 64 aaKnown RBP12.3□□□□□ -0.44
CLN3-217ENST00000565354 DNAH6Q9C0G6 4158 aa12.3□□□□□ -0.44
CLN3-217ENST00000565354 TRGV11A0A075B6L2 103 aa12.29□□□□□ -0.44
CLN3-217ENST00000565354 S100A9P06702 114 aaKnown RBP12.29□□□□□ -0.44
CLN3-217ENST00000565354 DEFB130BP0DP73 79 aa12.29□□□□□ -0.44
CLN3-217ENST00000565354 DEFB130AP0DP74 79 aa12.29□□□□□ -0.44
CLN3-217ENST00000565354 BCL2P10415 239 aa12.29□□□□□ -0.44
CLN3-217ENST00000565354 ZNF415Q09FC8 603 aa12.29□□□□□ -0.44
CLN3-217ENST00000565354 TMEM183BQ1AE95 376 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 182.9 ms