RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 NBL1P41271 181 aa10.23□□□□□ -0.77
CLN3-210ENST00000563874 OR4X2Q8NGF9 303 aa10.22□□□□□ -0.77
CLN3-210ENST00000563874 TMEM190Q8WZ59 177 aa10.22□□□□□ -0.77
CLN3-210ENST00000563874 FABP5P3A8MUU1 101 aa10.22□□□□□ -0.77
CLN3-210ENST00000563874 K7ERJ3 54 aa10.22□□□□□ -0.77
CLN3-210ENST00000563874 COX8CQ7Z4L0 72 aa10.22□□□□□ -0.77
CLN3-210ENST00000563874 GTSCR1Q86UQ5 136 aa10.22□□□□□ -0.77
CLN3-210ENST00000563874 TRAV26-2A0A0B4J265 109 aa10.22□□□□□ -0.77
CLN3-210ENST00000563874 FXYD2P54710 66 aa10.22□□□□□ -0.77
CLN3-210ENST00000563874 ECSCRQ19T08 205 aa10.22□□□□□ -0.77
CLN3-210ENST00000563874 Q6ZQT7 251 aa10.22□□□□□ -0.77
CLN3-210ENST00000563874 TMEM158Q8WZ71 300 aa10.22□□□□□ -0.77
CLN3-210ENST00000563874 FOXC2Q99958 501 aa10.22□□□□□ -0.77
CLN3-210ENST00000563874 SPCS1Q9Y6A9 102 aa10.22□□□□□ -0.77
CLN3-210ENST00000563874 ODF3BA8MYP8 253 aa10.21□□□□□ -0.77
CLN3-210ENST00000563874 TRGV3P03979 118 aa10.21□□□□□ -0.77
CLN3-210ENST00000563874 CDSNQ15517 529 aa10.21□□□□□ -0.77
CLN3-210ENST00000563874 VMO1Q7Z5L0 202 aa10.21□□□□□ -0.77
CLN3-210ENST00000563874 HHLA3Q9XRX5 114 aa10.21□□□□□ -0.77
CLN3-210ENST00000563874 ZFHX3Q15911 3703 aa10.21□□□□□ -0.77
CLN3-210ENST00000563874 A0A1W2PPM0 123 aa10.21□□□□□ -0.78
CLN3-210ENST00000563874 FBLL1A6NHQ2 334 aaKnown RBP10.21□□□□□ -0.78
CLN3-210ENST00000563874 ZNF207O43670 478 aaKnown RBP10.21□□□□□ -0.78
CLN3-210ENST00000563874 PRTN3P24158 256 aa10.21□□□□□ -0.78
CLN3-210ENST00000563874 C15orf32Q32M92 178 aa10.21□□□□□ -0.78
CLN3-210ENST00000563874 DTX2Q86UW9 622 aa10.21□□□□□ -0.78
CLN3-210ENST00000563874 IGF2RP11717 2491 aa10.21□□□□□ -0.78
CLN3-210ENST00000563874 IGHV7-81A0A0B4J1V7 117 aa10.2□□□□□ -0.78
CLN3-210ENST00000563874 SIVA1O15304 175 aa10.2□□□□□ -0.78
CLN3-210ENST00000563874 FCER1GP30273 86 aa10.2□□□□□ -0.78
CLN3-210ENST00000563874 ATP5J2P56134 94 aa10.2□□□□□ -0.78
CLN3-210ENST00000563874 C11orf21Q9P2W6 132 aa10.2□□□□□ -0.78
CLN3-210ENST00000563874 COL6A6A6NMZ7 2263 aa10.2□□□□□ -0.78
CLN3-210ENST00000563874 TIMD4Q96H15 378 aa10.2□□□□□ -0.78
CLN3-210ENST00000563874 VKORC1Q9BQB6 163 aa10.2□□□□□ -0.78
CLN3-210ENST00000563874 IGKV3D-20A0A0C4DH25 116 aa10.2□□□□□ -0.78
CLN3-210ENST00000563874 UFC1Q9Y3C8 167 aa10.2□□□□□ -0.78
CLN3-210ENST00000563874 ZC2HC1BQ5TFG8 222 aa10.19□□□□□ -0.78
CLN3-210ENST00000563874 PSMG3-AS1Q96PY0 264 aa10.19□□□□□ -0.78
CLN3-210ENST00000563874 TMEM160Q9NX00 188 aa10.19□□□□□ -0.78
CLN3-210ENST00000563874 IGKCP01834 107 aa10.19□□□□□ -0.78
CLN3-210ENST00000563874 TMEM8BA6NDV4 472 aa10.18□□□□□ -0.78
CLN3-210ENST00000563874 CHAC1Q9BUX1 264 aa10.18□□□□□ -0.78
CLN3-210ENST00000563874 NXT2Q9NPJ8 142 aaKnown RBP10.18□□□□□ -0.78
CLN3-210ENST00000563874 TRAV40A0A0B4J280 105 aa10.18□□□□□ -0.78
CLN3-210ENST00000563874 SAMD5Q5TGI4 173 aa10.18□□□□□ -0.78
CLN3-210ENST00000563874 CNFNQ9BYD5 112 aa10.18□□□□□ -0.78
CLN3-210ENST00000563874 AGPAT4-IT1Q9H0P7 198 aa10.18□□□□□ -0.78
CLN3-210ENST00000563874 M0R1W7 72 aa10.18□□□□□ -0.78
CLN3-210ENST00000563874 SPRY2O43597 315 aa10.18□□□□□ -0.78
CLN3-210ENST00000563874 BUB3O43684 328 aa10.18□□□□□ -0.78
CLN3-210ENST00000563874 SMIM13P0DJ93 91 aa10.18□□□□□ -0.78
CLN3-210ENST00000563874 FABP2P12104 132 aa10.18□□□□□ -0.78
CLN3-210ENST00000563874 ZFP36P26651 326 aaKnown RBP10.18□□□□□ -0.78
CLN3-210ENST00000563874 CLEC19AQ6UXS0 136 aa10.18□□□□□ -0.78
CLN3-210ENST00000563874 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.18□□□□□ -0.78
CLN3-210ENST00000563874 TRBV25-1A0A075B6N4 114 aa10.17□□□□□ -0.78
CLN3-210ENST00000563874 G3V318 75 aa10.17□□□□□ -0.78
CLN3-210ENST00000563874 SCGB2A1O75556 95 aa10.17□□□□□ -0.78
CLN3-210ENST00000563874 SMIM17P0DL12 118 aa10.17□□□□□ -0.78
CLN3-210ENST00000563874 LINC01559Q495D7 138 aa10.17□□□□□ -0.78
CLN3-210ENST00000563874 CCDC144NLQ6NUI1 221 aa10.17□□□□□ -0.78
CLN3-210ENST00000563874 Q8N6K4 173 aa10.17□□□□□ -0.78
CLN3-210ENST00000563874 NHP2Q9NX24 153 aaKnown RBP10.17□□□□□ -0.78
CLN3-210ENST00000563874 MRPL35Q9NZE8 188 aaKnown RBP10.17□□□□□ -0.78
CLN3-210ENST00000563874 LINC01548A6NM66 108 aa10.17□□□□□ -0.78
CLN3-210ENST00000563874 ARL3P36405 182 aa10.17□□□□□ -0.78
CLN3-210ENST00000563874 CKS1BP61024 79 aa10.17□□□□□ -0.78
CLN3-210ENST00000563874 Q8N9W7 124 aa10.17□□□□□ -0.78
CLN3-210ENST00000563874 MSRB2Q9Y3D2 182 aa10.17□□□□□ -0.78
CLN3-210ENST00000563874 CCL21O00585 134 aa10.16□□□□□ -0.78
CLN3-210ENST00000563874 ZMAT4Q9H898 229 aa10.16□□□□□ -0.78
CLN3-210ENST00000563874 ZFAND3Q9H8U3 227 aa10.16□□□□□ -0.78
CLN3-210ENST00000563874 SS18L2Q9UHA2 77 aa10.16□□□□□ -0.78
CLN3-210ENST00000563874 CELSR1Q9NYQ6 3014 aa10.16□□□□□ -0.78
CLN3-210ENST00000563874 G3V4G9 280 aa10.16□□□□□ -0.78
CLN3-210ENST00000563874 ATP6V0E1O15342 81 aa10.16□□□□□ -0.78
CLN3-210ENST00000563874 EFNA4P52798 201 aa10.16□□□□□ -0.78
CLN3-210ENST00000563874 ZNF502Q8TBZ5 544 aa10.16□□□□□ -0.78
CLN3-210ENST00000563874 NPFFR1Q9GZQ6 430 aa10.16□□□□□ -0.78
CLN3-210ENST00000563874 DPM2O94777 84 aa10.15□□□□□ -0.78
CLN3-210ENST00000563874 RPL24P83731 157 aaKnown RBP10.15□□□□□ -0.78
CLN3-210ENST00000563874 CLPSL1A2RUU4 121 aa10.15□□□□□ -0.78
CLN3-210ENST00000563874 SMAGPQ0VAQ4 97 aa10.15□□□□□ -0.78
CLN3-210ENST00000563874 Q8N8P6 123 aa10.15□□□□□ -0.78
CLN3-210ENST00000563874 IGLV2-18A0A075B6J9 118 aa10.15□□□□□ -0.79
CLN3-210ENST00000563874 TRBV7-9A0A0J9YWB2 115 aa10.15□□□□□ -0.79
CLN3-210ENST00000563874 NEGR1Q7Z3B1 354 aa10.15□□□□□ -0.79
CLN3-210ENST00000563874 MAPKAPK5-AS1Q8N8E1 139 aa10.15□□□□□ -0.79
CLN3-210ENST00000563874 KLK15Q9H2R5 256 aa10.15□□□□□ -0.79
CLN3-210ENST00000563874 SPTAN1Q13813 2472 aaKnown RBP10.14□□□□□ -0.79
CLN3-210ENST00000563874 CCDC140Q96MF4 163 aa10.14□□□□□ -0.79
CLN3-210ENST00000563874 LINC01546A6NGU7 62 aa10.14□□□□□ -0.79
CLN3-210ENST00000563874 SRSF2Q01130 221 aaKnown RBP10.14□□□□□ -0.79
CLN3-210ENST00000563874 FOXC1Q12948 553 aa10.14□□□□□ -0.79
CLN3-210ENST00000563874 TMEM78Q5T7P6 136 aa10.14□□□□□ -0.79
CLN3-210ENST00000563874 SPANXN1Q5VSR9 72 aa10.14□□□□□ -0.79
CLN3-210ENST00000563874 OR5A1Q8NGJ0 315 aa10.14□□□□□ -0.79
CLN3-210ENST00000563874 AGRNO00468 2067 aa10.14□□□□□ -0.79
CLN3-210ENST00000563874 TRAV8-2A0A0B4J237 113 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 216.1 ms