RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 LURAP1LQ8IV03 231 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 ZNF414Q96IQ9 312 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 IZUMO1RA6ND01 250 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 NCR2O95944 276 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 TRGC2P03986 189 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 PSMB8P28062 276 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 RIGQ13278 110 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 FAM162BQ5T6X4 162 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 FAM90A2PQ658T7 463 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 TMEM86BQ8N661 226 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 GPR61Q9BZJ8 451 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 TMEM160Q9NX00 188 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 PPP1R2P9O14990 202 aa4.15□□□□□ -1.74
VPS13C-209ENST00000560637 DUSP14O95147 198 aaKnown RBP4.15□□□□□ -1.74
VPS13C-209ENST00000560637 EVI2AP22794 236 aa4.15□□□□□ -1.74
VPS13C-209ENST00000560637 KIR3DS1Q14943 382 aa4.15□□□□□ -1.74
VPS13C-209ENST00000560637 FER1L6-AS1Q8NA97 138 aa4.15□□□□□ -1.74
VPS13C-209ENST00000560637 NUDT10Q8NFP7 164 aa4.15□□□□□ -1.74
VPS13C-209ENST00000560637 NUDT11Q96G61 164 aa4.15□□□□□ -1.74
VPS13C-209ENST00000560637 AGPAT4-IT1Q9H0P7 198 aa4.15□□□□□ -1.74
VPS13C-209ENST00000560637 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.15□□□□□ -1.75
VPS13C-209ENST00000560637 TRAV21A0A0B4J279 112 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 A0A1B0GUS0 222 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 GAGE12BA1L429 117 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 TMEM213A2RRL7 107 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 TMEM262E9PQX1 116 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 GAGE7O76087 117 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 GAGE12FP0CL80 117 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 GAGE12GP0CL81 117 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 GAGE12IP0CL82 117 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 BTF3P20290 206 aaKnown RBP4.15□□□□□ -1.75
VPS13C-209ENST00000560637 KRTDAPP60985 99 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 KRTAP24-1Q3LI83 254 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 C4orf3Q8WVX3 66 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 GOLT1BQ9Y3E0 138 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 TRBV20OR9-2A0A075B6H5 130 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 TRGV4A0A0C4DH28 118 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 DIRC3C9JPN6 131 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 H3BUA1 57 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 SH2D1AO60880 128 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 SCGB1D1O95968 90 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 C14orf178Q8N769 122 aaPredicted RBP4.15□□□□□ -1.75
VPS13C-209ENST00000560637 FMC1Q96HJ9 113 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 RCHY1Q96PM5 261 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 TXNDC17Q9BRA2 123 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 SDF2L1Q9HCN8 221 aa4.15□□□□□ -1.75
VPS13C-209ENST00000560637 ZMAT5Q9UDW3 170 aaKnown RBP4.15□□□□□ -1.75
VPS13C-209ENST00000560637 GNRH2O43555 120 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 FCER1GP30273 86 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 GFI1BQ5VTD9 330 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 LINC01551Q86U37 167 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 BTF3L4Q96K17 158 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 RPP21Q9H633 154 aaKnown RBP4.14□□□□□ -1.75
VPS13C-209ENST00000560637 A0A096LNT2 108 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 SMKR1H3BMG3 65 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 ARMS2P0C7Q2 107 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 CRISP2P16562 243 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 AMTP48728 403 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 ZNF415Q09FC8 603 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 FNDC10F2Z333 226 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 APCSP02743 223 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 SRIP30626 198 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 MYCNOSP40205 109 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 ANXA2RQ3ZCQ2 193 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 ZNF876PQ49A33 203 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 C9orf66Q5T8R8 295 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 GDF5OSQ5U4N7 250 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 Q86TA4 180 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 PHLDA1Q8WV24 401 aaPredicted RBP4.14□□□□□ -1.75
VPS13C-209ENST00000560637 FAM167A-AS1Q96KT0 104 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 C18orf15Q96N68 181 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 GSN-AS1Q9NRJ2 163 aa4.14□□□□□ -1.75
VPS13C-209ENST00000560637 MUC4Q99102 2169 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 INSP01308 110 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 S100A8P05109 93 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 ADCYAP1P18509 176 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 SNRPEP62304 92 aaKnown RBP4.13□□□□□ -1.75
VPS13C-209ENST00000560637 ANKRD39Q53RE8 183 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 LYZL1Q6UWQ5 148 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 GPHB5Q86YW7 130 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 SYT8Q8NBV8 401 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 C11orf1Q9H5F2 150 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 MRPL16Q9NX20 251 aaKnown RBP4.13□□□□□ -1.75
VPS13C-209ENST00000560637 A0A0J9YY99 117 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 A0A1B0GUT8 65 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 F5H768 121 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 CDKN1BP46527 198 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 TAS2R60P59551 318 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 AARDQ4LEZ3 155 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 ZC2HC1AQ96GY0 325 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 TRBV9A0A0B4J1U6 114 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 CXorf65A6NEN9 183 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 PRSS46E5RG02 174 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 PRSS1P07477 247 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 LEPP41159 167 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 MRGPRG-AS1Q2M3A8 158 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 VWC2Q2TAL6 325 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 ZNF503Q96F45 646 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 MRPL18Q9H0U6 180 aaKnown RBP4.13□□□□□ -1.75
VPS13C-209ENST00000560637 NOP10Q9NPE3 64 aaKnown RBP4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 119.7 ms