RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ZNF253O75346 499 aa9.28□□□□□ -0.92
SHMT2-230ENST00000557427 LTAP01374 205 aa9.28□□□□□ -0.92
SHMT2-230ENST00000557427 S100A8P05109 93 aa9.28□□□□□ -0.92
SHMT2-230ENST00000557427 SNRPCP09234 159 aaKnown RBP9.28□□□□□ -0.92
SHMT2-230ENST00000557427 AKR1D1P51857 326 aa9.28□□□□□ -0.92
SHMT2-230ENST00000557427 NDUFA6P56556 154 aa9.28□□□□□ -0.92
SHMT2-230ENST00000557427 CEMP1Q6PRD7 247 aaPredicted RBP9.28□□□□□ -0.92
SHMT2-230ENST00000557427 SIGLEC15Q6ZMC9 328 aa9.28□□□□□ -0.92
SHMT2-230ENST00000557427 OR2K2Q8NGT1 345 aa9.28□□□□□ -0.92
SHMT2-230ENST00000557427 CMTM2Q8TAZ6 248 aa9.28□□□□□ -0.92
SHMT2-230ENST00000557427 MLST8Q9BVC4 326 aa9.28□□□□□ -0.92
SHMT2-230ENST00000557427 RNASE7Q9H1E1 156 aaKnown RBP9.28□□□□□ -0.92
SHMT2-230ENST00000557427 ZFAND3Q9H8U3 227 aa9.28□□□□□ -0.92
SHMT2-230ENST00000557427 A0A1B0GVY2 172 aa9.27□□□□□ -0.93
SHMT2-230ENST00000557427 ZNF207O43670 478 aaKnown RBP9.27□□□□□ -0.93
SHMT2-230ENST00000557427 GATCO43716 136 aaKnown RBP9.27□□□□□ -0.93
SHMT2-230ENST00000557427 CD7P09564 240 aa9.27□□□□□ -0.93
SHMT2-230ENST00000557427 PSG9Q00887 426 aa9.27□□□□□ -0.93
SHMT2-230ENST00000557427 RELQ04864 619 aaPredicted RBP9.27□□□□□ -0.93
SHMT2-230ENST00000557427 COX19Q49B96 90 aa9.27□□□□□ -0.93
SHMT2-230ENST00000557427 TOMM20LQ6UXN7 152 aa9.27□□□□□ -0.93
SHMT2-230ENST00000557427 LINC00518Q8N0U6 118 aa9.27□□□□□ -0.93
SHMT2-230ENST00000557427 DEFB125Q8N687 156 aa9.27□□□□□ -0.93
SHMT2-230ENST00000557427 ZNF492Q9P255 531 aa9.27□□□□□ -0.93
SHMT2-230ENST00000557427 UFC1Q9Y3C8 167 aa9.27□□□□□ -0.93
SHMT2-230ENST00000557427 DNAH6Q9C0G6 4158 aa9.26□□□□□ -0.93
SHMT2-230ENST00000557427 SERTM2A0A1B0GWG4 89 aa9.26□□□□□ -0.93
SHMT2-230ENST00000557427 SMIM27A0A1W2PRY6 76 aa9.26□□□□□ -0.93
SHMT2-230ENST00000557427 NUPR2A6NF83 97 aa9.26□□□□□ -0.93
SHMT2-230ENST00000557427 K7EQM0 130 aa9.26□□□□□ -0.93
SHMT2-230ENST00000557427 LGALS9CQ6DKI2 356 aa9.26□□□□□ -0.93
SHMT2-230ENST00000557427 Q86TA4 180 aa9.26□□□□□ -0.93
SHMT2-230ENST00000557427 EXOC3-AS1Q8N2X6 119 aa9.26□□□□□ -0.93
SHMT2-230ENST00000557427 TMEM75Q8N9X5 138 aa9.26□□□□□ -0.93
SHMT2-230ENST00000557427 GRAMD2BQ96HH9 432 aa9.26□□□□□ -0.93
SHMT2-230ENST00000557427 C17orf77Q96MU5 243 aa9.26□□□□□ -0.93
SHMT2-230ENST00000557427 AAMDCQ9H7C9 122 aa9.26□□□□□ -0.93
SHMT2-230ENST00000557427 RPH3ALQ9UNE2 315 aa9.26□□□□□ -0.93
SHMT2-230ENST00000557427 DNAH11Q96DT5 4516 aa9.25□□□□□ -0.93
SHMT2-230ENST00000557427 A0A087X0K7 114 aa9.25□□□□□ -0.93
SHMT2-230ENST00000557427 ZNF705GA8MUZ8 300 aaPredicted RBP9.25□□□□□ -0.93
SHMT2-230ENST00000557427 IGLV2-11P01706 119 aa9.25□□□□□ -0.93
SHMT2-230ENST00000557427 COA6Q5JTJ3 125 aaKnown RBP9.25□□□□□ -0.93
SHMT2-230ENST00000557427 C1orf194Q5T5A4 169 aa9.25□□□□□ -0.93
SHMT2-230ENST00000557427 RBPMS2Q6ZRY4 209 aaKnown RBP9.25□□□□□ -0.93
SHMT2-230ENST00000557427 TMEM183AQ8IXX5 376 aa9.25□□□□□ -0.93
SHMT2-230ENST00000557427 TMEM61Q8N0U2 210 aa9.25□□□□□ -0.93
SHMT2-230ENST00000557427 NHLRC2Q8NBF2 726 aa9.25□□□□□ -0.93
SHMT2-230ENST00000557427 NUDT10Q8NFP7 164 aa9.25□□□□□ -0.93
SHMT2-230ENST00000557427 NUDT11Q96G61 164 aa9.25□□□□□ -0.93
SHMT2-230ENST00000557427 WFDC10AQ9H1F0 79 aa9.25□□□□□ -0.93
SHMT2-230ENST00000557427 TRAPPC1Q9Y5R8 145 aa9.25□□□□□ -0.93
SHMT2-230ENST00000557427 FBLL1A6NHQ2 334 aaKnown RBP9.24□□□□□ -0.93
SHMT2-230ENST00000557427 A8MWP6 167 aa9.24□□□□□ -0.93
SHMT2-230ENST00000557427 OR11H12B2RN74 326 aa9.24□□□□□ -0.93
SHMT2-230ENST00000557427 DIRC3C9JPN6 131 aa9.24□□□□□ -0.93
SHMT2-230ENST00000557427 NDUFA4O00483 81 aa9.24□□□□□ -0.93
SHMT2-230ENST00000557427 CT83Q5H943 113 aa9.24□□□□□ -0.93
SHMT2-230ENST00000557427 GOLT1AQ6ZVE7 132 aa9.24□□□□□ -0.93
SHMT2-230ENST00000557427 OR8I2Q8N0Y5 310 aa9.24□□□□□ -0.93
SHMT2-230ENST00000557427 ZFP30Q9Y2G7 519 aa9.24□□□□□ -0.93
SHMT2-230ENST00000557427 U3KQE9 123 aa9.24□□□□□ -0.93
SHMT2-230ENST00000557427 IGHV3-49A0A0A0MS15 119 aa9.23□□□□□ -0.93
SHMT2-230ENST00000557427 C19orf71A6NCJ1 209 aa9.23□□□□□ -0.93
SHMT2-230ENST00000557427 BUB3O43684 328 aa9.23□□□□□ -0.93
SHMT2-230ENST00000557427 MT-ND6P03923 174 aa9.23□□□□□ -0.93
SHMT2-230ENST00000557427 CSN1S1P47710 185 aa9.23□□□□□ -0.93
SHMT2-230ENST00000557427 PSG3Q16557 428 aa9.23□□□□□ -0.93
SHMT2-230ENST00000557427 WDR73Q6P4I2 378 aa9.23□□□□□ -0.93
SHMT2-230ENST00000557427 RASL11AQ6T310 242 aa9.23□□□□□ -0.93
SHMT2-230ENST00000557427 HIST3H2BBQ8N257 126 aa9.23□□□□□ -0.93
SHMT2-230ENST00000557427 METTL26Q96S19 204 aa9.23□□□□□ -0.93
SHMT2-230ENST00000557427 GNB1LQ9BYB4 327 aa9.23□□□□□ -0.93
SHMT2-230ENST00000557427 PSG8Q9UQ74 426 aa9.23□□□□□ -0.93
SHMT2-230ENST00000557427 DNAH17Q9UFH2 4485 aa9.22□□□□□ -0.93
SHMT2-230ENST00000557427 SMIM6P0DI80 62 aa9.22□□□□□ -0.93
SHMT2-230ENST00000557427 MEOX2P50222 304 aa9.22□□□□□ -0.93
SHMT2-230ENST00000557427 PRR27Q6MZM9 219 aa9.22□□□□□ -0.93
SHMT2-230ENST00000557427 PRNTQ86SH4 94 aa9.22□□□□□ -0.93
SHMT2-230ENST00000557427 OR4B1Q8NGF8 309 aa9.22□□□□□ -0.93
SHMT2-230ENST00000557427 TSKUQ8WUA8 353 aa9.22□□□□□ -0.93
SHMT2-230ENST00000557427 SGK494Q96LW2 274 aa9.22□□□□□ -0.93
SHMT2-230ENST00000557427 OVOL2Q9BRP0 275 aa9.22□□□□□ -0.93
SHMT2-230ENST00000557427 RPP21Q9H633 154 aaKnown RBP9.22□□□□□ -0.93
SHMT2-230ENST00000557427 DAZ1Q9NQZ3 744 aaKnown RBP9.22□□□□□ -0.93
SHMT2-230ENST00000557427 HSPG2P98160 4391 aa9.22□□□□□ -0.93
SHMT2-230ENST00000557427 IGHV3OR16-13A0A075B7E8 117 aa9.21□□□□□ -0.94
SHMT2-230ENST00000557427 TRAV8-1A0A0A6YYK1 113 aa9.21□□□□□ -0.94
SHMT2-230ENST00000557427 IGHV3-74A0A0B4J1X5 117 aa9.21□□□□□ -0.94
SHMT2-230ENST00000557427 TRAV25A0A0B4J276 109 aa9.21□□□□□ -0.94
SHMT2-230ENST00000557427 NPIPB6E9PJ23 425 aa9.21□□□□□ -0.94
SHMT2-230ENST00000557427 K7EMT4 169 aa9.21□□□□□ -0.94
SHMT2-230ENST00000557427 C16orf54Q6UWD8 224 aa9.21□□□□□ -0.94
SHMT2-230ENST00000557427 SLC50A1Q9BRV3 221 aa9.21□□□□□ -0.94
SHMT2-230ENST00000557427 MRPL18Q9H0U6 180 aaKnown RBP9.21□□□□□ -0.94
SHMT2-230ENST00000557427 ZNF331Q9NQX6 463 aaPredicted RBP9.21□□□□□ -0.94
SHMT2-230ENST00000557427 NAT8BQ9UHF3 227 aa9.21□□□□□ -0.94
SHMT2-230ENST00000557427 PKD1P98161 4303 aa9.2□□□□□ -0.94
SHMT2-230ENST00000557427 A0A0J9YWU9 116 aa9.2□□□□□ -0.94
SHMT2-230ENST00000557427 XKRY2A2RUG3 117 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 140.9 ms