RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 SYCP2Q9BX26 1530 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 PLXNC1O60486 1568 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 RIF1Q5UIP0 2472 aaKnown RBP1.3□□□□□ -2.2
SCFD1-221ENST00000556534 WDFY3Q8IZQ1 3526 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 HEATR1Q9H583 2144 aaKnown RBP1.3□□□□□ -2.2
SCFD1-221ENST00000556534 TRIOO75962 3097 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 ARFGEF3Q5TH69 2177 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 KIAA0100Q14667 2235 aaKnown RBP1.3□□□□□ -2.2
SCFD1-221ENST00000556534 SDK1Q7Z5N4 2213 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 DIDO1Q9BTC0 2240 aaKnown RBP1.3□□□□□ -2.2
SCFD1-221ENST00000556534 GABARAPH6UMI1 98 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 HIST1H2BKO60814 126 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 DHFRP00374 187 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 HIST1H2BJP06899 126 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 BCL2P10415 239 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 RPS3P23396 243 aaKnown RBP eCLIP1.3□□□□□ -2.2
SCFD1-221ENST00000556534 S100A11P31949 105 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 RAB4BP61018 213 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 C1orf137Q5JT78 98 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 C1orf134Q5TEV5 83 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 SAMD13Q5VXD3 122 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 IFT20Q8IY31 132 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 C12orf29Q8N999 325 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 OR5D16Q8NGK9 328 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 ZNF714Q96N38 554 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 CCDC115Q96NT0 180 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 NAA38Q9BRA0 125 aaKnown RBP1.3□□□□□ -2.2
SCFD1-221ENST00000556534 CACYBPQ9HB71 228 aaKnown RBP1.3□□□□□ -2.2
SCFD1-221ENST00000556534 NAT8BQ9UHF3 227 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 MGAMO43451 1857 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 SPTAN1Q13813 2472 aaKnown RBP1.3□□□□□ -2.2
SCFD1-221ENST00000556534 ERBINQ96RT1 1412 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 RRBP1Q9P2E9 1410 aaKnown RBP1.3□□□□□ -2.2
SCFD1-221ENST00000556534 ADGRL2O95490 1459 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 PXDNQ92626 1479 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 ARHGEF5Q12774 1597 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 C2CD3Q4AC94 2353 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 FMN2Q9NZ56 1722 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 ABCA2Q9BZC7 2435 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 RP1L1Q8IWN7 2480 aaPredicted RBP1.29□□□□□ -2.2
SCFD1-221ENST00000556534 ALPK3Q96L96 1907 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 TANC2Q9HCD6 1990 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 NF1P21359 2839 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 TRBV6-8A0A0A6YYG3 113 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 TSTD3H0UI37 97 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 H3BQV1 296 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 RER1O15258 196 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 HCRTO43612 131 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 PFDN1O60925 122 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 CST7O76096 145 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 RPL35P42766 123 aaKnown RBP1.29□□□□□ -2.2
SCFD1-221ENST00000556534 CNBPP62633 177 aaKnown RBP1.29□□□□□ -2.2
SCFD1-221ENST00000556534 KLRD1Q13241 179 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 UNQ6190/PRO20217Q6UXQ8 127 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.29□□□□□ -2.2
SCFD1-221ENST00000556534 CLECL1Q8IZS7 167 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 OR4K15Q8NH41 348 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 OR4C6Q8NH72 309 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 CHCHD1Q96BP2 118 aaKnown RBP1.29□□□□□ -2.2
SCFD1-221ENST00000556534 CYSTM1Q9H1C7 97 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 GINS2Q9Y248 185 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 MED31Q9Y3C7 131 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 LY96Q9Y6Y9 160 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 KDM6AO15550 1401 aaPredicted RBP1.29□□□□□ -2.2
SCFD1-221ENST00000556534 SMG6Q86US8 1419 aaKnown RBP1.29□□□□□ -2.2
SCFD1-221ENST00000556534 SPTA1P02549 2419 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 PLEKHH2Q8IVE3 1493 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 DUOX2Q9NRD8 1548 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 SAMD9Q5K651 1589 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 PAPPAQ13219 1627 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 DSPP15924 2871 aaKnown RBP1.29□□□□□ -2.2
SCFD1-221ENST00000556534 FRYLO94915 3013 aa1.29□□□□□ -2.2
SCFD1-221ENST00000556534 PTPRFP10586 1907 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 GVINP1Q7Z2Y8 2422 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 LOC105371267A0A1B0GV96 52 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 EIF3IQ13347 325 aaKnown RBP1.28□□□□□ -2.2
SCFD1-221ENST00000556534 Q6ZSA8 131 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 CROCCP2Q86T23 111 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 TMEM254Q8TBM7 123 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 ISOC1Q96CN7 298 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 TRAPPC2LQ9UL33 140 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 LAMTOR2Q9Y2Q5 125 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 RTL9Q8NET4 1388 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 OVOS2A0A0G2JMS6 1433 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 OVOS2A0A0J9YW53 1432 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 OVOS2Q6IE36 1432 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 ERVK-7P63135 1459 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 FYCO1Q9BQS8 1478 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 PLCH1Q4KWH8 1693 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 PKD1L3Q7Z443 1732 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 NRAPQ86VF7 1730 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 PEAK1Q9H792 1746 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 POLQO75417 2590 aa1.28□□□□□ -2.2
SCFD1-221ENST00000556534 FREM2Q5SZK8 3169 aa1.28□□□□□ -2.21
SCFD1-221ENST00000556534 NBPF19A0A087WUL8 3843 aa1.27□□□□□ -2.21
SCFD1-221ENST00000556534 COL12A1Q99715 3063 aa1.27□□□□□ -2.21
SCFD1-221ENST00000556534 FLNCQ14315 2725 aa1.27□□□□□ -2.21
SCFD1-221ENST00000556534 NBEAL1Q6ZS30 2694 aa1.27□□□□□ -2.21
SCFD1-221ENST00000556534 QSER1Q2KHR3 1735 aa1.27□□□□□ -2.21
SCFD1-221ENST00000556534 TOPAZ1Q8N9V7 1692 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms