RNA–Protein interactions for RNA: ENST00000554258.1

NEK9-204, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-204ENST00000554258 FAM229AH3BQW9 127 aa11.9□□□□□ -0.5
NEK9-204ENST00000554258 TEX46H3BTG2 121 aa11.9□□□□□ -0.5
NEK9-204ENST00000554258 SMR3BP02814 79 aaPredicted RBP11.9□□□□□ -0.5
NEK9-204ENST00000554258 GIG44P09565 113 aaPredicted RBP11.9□□□□□ -0.5
NEK9-204ENST00000554258 Q6ZSN1 163 aa11.9□□□□□ -0.5
NEK9-204ENST00000554258 TRPT1Q86TN4 253 aaKnown RBP11.9□□□□□ -0.5
NEK9-204ENST00000554258 CCDC28AQ8IWP9 274 aa11.9□□□□□ -0.5
NEK9-204ENST00000554258 ZNF738Q8NE65 137 aa11.9□□□□□ -0.5
NEK9-204ENST00000554258 OR8A1Q8NGG7 326 aa11.9□□□□□ -0.5
NEK9-204ENST00000554258 RXFP4Q8TDU9 374 aa11.9□□□□□ -0.5
NEK9-204ENST00000554258 ATG101Q9BSB4 218 aa11.9□□□□□ -0.5
NEK9-204ENST00000554258 NKX6-2Q9C056 277 aaPredicted RBP11.9□□□□□ -0.5
NEK9-204ENST00000554258 GGTLC3B5MD39 225 aa11.89□□□□□ -0.51
NEK9-204ENST00000554258 F6UB75 175 aa11.89□□□□□ -0.51
NEK9-204ENST00000554258 SUMO1P63165 101 aaKnown RBP11.89□□□□□ -0.51
NEK9-204ENST00000554258 ACTL10Q5JWF8 245 aa11.89□□□□□ -0.51
NEK9-204ENST00000554258 EBLN2Q6P2I7 272 aa11.89□□□□□ -0.51
NEK9-204ENST00000554258 STHQ8IWL8 128 aa11.89□□□□□ -0.51
NEK9-204ENST00000554258 IQCF2Q8IXL9 164 aa11.89□□□□□ -0.51
NEK9-204ENST00000554258 DUSP14O95147 198 aaKnown RBP11.88□□□□□ -0.51
NEK9-204ENST00000554258 A0A1B0GV50 99 aa11.87□□□□□ -0.51
NEK9-204ENST00000554258 RBAKDNA6NC62 111 aa11.87□□□□□ -0.51
NEK9-204ENST00000554258 KRTAP29-1A8MX34 341 aaPredicted RBP11.87□□□□□ -0.51
NEK9-204ENST00000554258 DIRC3C9JPN6 131 aa11.87□□□□□ -0.51
NEK9-204ENST00000554258 PAGE4O60829 102 aa11.87□□□□□ -0.51
NEK9-204ENST00000554258 SLC25A5P05141 298 aaKnown RBP11.87□□□□□ -0.51
NEK9-204ENST00000554258 NMBP08949 121 aa11.87□□□□□ -0.51
NEK9-204ENST00000554258 CSN1S1P47710 185 aa11.87□□□□□ -0.51
NEK9-204ENST00000554258 UBE2G2P60604 165 aa11.87□□□□□ -0.51
NEK9-204ENST00000554258 AMTNQ6UX39 209 aa11.87□□□□□ -0.51
NEK9-204ENST00000554258 C9orf47Q6ZRZ4 202 aa11.87□□□□□ -0.51
NEK9-204ENST00000554258 C5orf17Q8NAS9 161 aa11.87□□□□□ -0.51
NEK9-204ENST00000554258 MANBALQ9NQG1 85 aa11.87□□□□□ -0.51
NEK9-204ENST00000554258 EPDR1Q9UM22 224 aa11.87□□□□□ -0.51
NEK9-204ENST00000554258 NPIPB6E9PJ23 425 aa11.86□□□□□ -0.51
NEK9-204ENST00000554258 CNN1P51911 297 aaKnown RBP11.86□□□□□ -0.51
NEK9-204ENST00000554258 TXNDC17Q9BRA2 123 aa11.86□□□□□ -0.51
NEK9-204ENST00000554258 TCEAL7Q9BRU2 100 aa11.86□□□□□ -0.51
NEK9-204ENST00000554258 PPP1R14DQ9NXH3 145 aa11.86□□□□□ -0.51
NEK9-204ENST00000554258 ZNF705DP0CH99 300 aaPredicted RBP11.85□□□□□ -0.51
NEK9-204ENST00000554258 ZNF705BP0CI00 300 aaPredicted RBP11.85□□□□□ -0.51
NEK9-204ENST00000554258 HTN3P15516 51 aa11.85□□□□□ -0.51
NEK9-204ENST00000554258 BTF3P20290 206 aaKnown RBP11.85□□□□□ -0.51
NEK9-204ENST00000554258 TAGLN2P37802 199 aaKnown RBP11.85□□□□□ -0.51
NEK9-204ENST00000554258 OR10J6PQ8NGY7 276 aa11.85□□□□□ -0.51
NEK9-204ENST00000554258 ZNRF2Q8NHG8 242 aa11.85□□□□□ -0.51
NEK9-204ENST00000554258 CMTM2Q8TAZ6 248 aa11.85□□□□□ -0.51
NEK9-204ENST00000554258 LINC00477Q96M19 166 aa11.85□□□□□ -0.51
NEK9-204ENST00000554258 AGPAT4-IT1Q9H0P7 198 aa11.85□□□□□ -0.51
NEK9-204ENST00000554258 GNG13Q9P2W3 67 aa11.85□□□□□ -0.51
NEK9-204ENST00000554258 SERTM2A0A1B0GWG4 89 aa11.84□□□□□ -0.51
NEK9-204ENST00000554258 TCRAP04437 139 aa11.84□□□□□ -0.51
NEK9-204ENST00000554258 SPART-AS1P0CW21 52 aa11.84□□□□□ -0.51
NEK9-204ENST00000554258 PRB4P10163 310 aaPredicted RBP11.84□□□□□ -0.51
NEK9-204ENST00000554258 HIST1H1AQ02539 215 aaPredicted RBP11.84□□□□□ -0.51
NEK9-204ENST00000554258 FAM19A4Q96LR4 140 aa11.84□□□□□ -0.51
NEK9-204ENST00000554258 ODF3Q96PU9 254 aa11.84□□□□□ -0.51
NEK9-204ENST00000554258 IGKV2-40A0A087WW87 121 aaPredicted RBP11.83□□□□□ -0.52
NEK9-204ENST00000554258 IGKV2D-40P01614 121 aaPredicted RBP11.83□□□□□ -0.52
NEK9-204ENST00000554258 CT45A10P0DMU9 189 aa11.83□□□□□ -0.52
NEK9-204ENST00000554258 BCL2P10415 239 aa11.83□□□□□ -0.52
NEK9-204ENST00000554258 ATP5G3P48201 142 aa11.83□□□□□ -0.52
NEK9-204ENST00000554258 GNG5P63218 68 aa11.83□□□□□ -0.52
NEK9-204ENST00000554258 CST9LP1Q5W188 147 aa11.83□□□□□ -0.52
NEK9-204ENST00000554258 OR4B1Q8NGF8 309 aa11.83□□□□□ -0.52
NEK9-204ENST00000554258 HIST1H2BAQ96A08 127 aa11.83□□□□□ -0.52
NEK9-204ENST00000554258 VGLL1Q99990 258 aa11.83□□□□□ -0.52
NEK9-204ENST00000554258 TRBV7-9A0A0J9YWB2 115 aa11.82□□□□□ -0.52
NEK9-204ENST00000554258 NDUFS6O75380 124 aaKnown RBP11.82□□□□□ -0.52
NEK9-204ENST00000554258 IFNA1P01562 189 aa11.82□□□□□ -0.52
NEK9-204ENST00000554258 ERCC8Q13216 396 aa11.82□□□□□ -0.52
NEK9-204ENST00000554258 TMEM88Q6PEY1 159 aa11.82□□□□□ -0.52
NEK9-204ENST00000554258 GOLT1AQ6ZVE7 132 aa11.82□□□□□ -0.52
NEK9-204ENST00000554258 C15orf53Q8NAA6 179 aa11.82□□□□□ -0.52
NEK9-204ENST00000554258 PCNPQ8WW12 178 aaKnown RBP11.82□□□□□ -0.52
NEK9-204ENST00000554258 ZNF492Q9P255 531 aa11.82□□□□□ -0.52
NEK9-204ENST00000554258 KLF12Q9Y4X4 402 aa11.82□□□□□ -0.52
NEK9-204ENST00000554258 LOC102723971A0A1B0GUV8 181 aa11.81□□□□□ -0.52
NEK9-204ENST00000554258 RGS13O14921 159 aa11.81□□□□□ -0.52
NEK9-204ENST00000554258 IGLV2-11P01706 119 aa11.81□□□□□ -0.52
NEK9-204ENST00000554258 EMP1P54849 157 aa11.81□□□□□ -0.52
NEK9-204ENST00000554258 CLLU1Q5K131 121 aa11.81□□□□□ -0.52
NEK9-204ENST00000554258 CYB561D1Q8N8Q1 229 aa11.81□□□□□ -0.52
NEK9-204ENST00000554258 CSNK1G2-AS1Q8NCQ2 148 aa11.81□□□□□ -0.52
NEK9-204ENST00000554258 VAX2Q9UIW0 290 aa11.81□□□□□ -0.52
NEK9-204ENST00000554258 LENEPQ9Y5L5 61 aa11.81□□□□□ -0.52
NEK9-204ENST00000554258 RBFOX3A6NFN3 312 aa11.8□□□□□ -0.52
NEK9-204ENST00000554258 FBLL1A6NHQ2 334 aaKnown RBP11.8□□□□□ -0.52
NEK9-204ENST00000554258 F6UZH7 168 aa11.8□□□□□ -0.52
NEK9-204ENST00000554258 PEX7O00628 323 aa11.8□□□□□ -0.52
NEK9-204ENST00000554258 IGKV3-20P01619 116 aa11.8□□□□□ -0.52
NEK9-204ENST00000554258 CRISP2P16562 243 aa11.8□□□□□ -0.52
NEK9-204ENST00000554258 FUSP35637 526 aaKnown RBP eCLIP11.8□□□□□ -0.52
NEK9-204ENST00000554258 ZNF138P52744 262 aa11.8□□□□□ -0.52
NEK9-204ENST00000554258 NUTF2P61970 127 aaKnown RBP11.8□□□□□ -0.52
NEK9-204ENST00000554258 MEF2BQ02080 365 aaPredicted RBP11.8□□□□□ -0.52
NEK9-204ENST00000554258 ZNF506Q5JVG8 444 aa11.8□□□□□ -0.52
NEK9-204ENST00000554258 C11orf52Q96A22 123 aa11.8□□□□□ -0.52
NEK9-204ENST00000554258 FAM210AQ96ND0 272 aa11.8□□□□□ -0.52
NEK9-204ENST00000554258 SLC35B3Q9H1N7 401 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms