RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 IGF2BP2-AS1Q96M15 143 aa13.08□□□□□ -0.32
SQSTM1-209ENST00000504627 LY96Q9Y6Y9 160 aa13.08□□□□□ -0.32
SQSTM1-209ENST00000504627 BIRC6Q9NR09 4857 aa13.08□□□□□ -0.32
SQSTM1-209ENST00000504627 AGRNO00468 2067 aa13.08□□□□□ -0.32
SQSTM1-209ENST00000504627 IGKV2-40A0A087WW87 121 aaPredicted RBP13.07□□□□□ -0.32
SQSTM1-209ENST00000504627 ZNF705FA8MVS1 300 aaPredicted RBP13.07□□□□□ -0.32
SQSTM1-209ENST00000504627 IGKV2D-40P01614 121 aaPredicted RBP13.07□□□□□ -0.32
SQSTM1-209ENST00000504627 GNG4P50150 75 aa13.07□□□□□ -0.32
SQSTM1-209ENST00000504627 NUTF2P61970 127 aaKnown RBP13.07□□□□□ -0.32
SQSTM1-209ENST00000504627 SVBPQ8N300 66 aa13.07□□□□□ -0.32
SQSTM1-209ENST00000504627 SMIM12Q96EX1 92 aa13.07□□□□□ -0.32
SQSTM1-209ENST00000504627 TRBV20OR9-2A0A075B6H5 130 aa13.06□□□□□ -0.32
SQSTM1-209ENST00000504627 IGLV2-11P01706 119 aa13.06□□□□□ -0.32
SQSTM1-209ENST00000504627 APOC3P02656 99 aa13.06□□□□□ -0.32
SQSTM1-209ENST00000504627 GIG44P09565 113 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-209ENST00000504627 MIFP14174 115 aa13.06□□□□□ -0.32
SQSTM1-209ENST00000504627 FLI1Q01543 452 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-209ENST00000504627 TRAV8-1A0A0A6YYK1 113 aa13.05□□□□□ -0.32
SQSTM1-209ENST00000504627 TRAV34A0A0B4J273 112 aa13.05□□□□□ -0.32
SQSTM1-209ENST00000504627 IGHV4-28A0A0C4DH34 117 aa13.05□□□□□ -0.32
SQSTM1-209ENST00000504627 PRAC2D3DTV9 90 aa13.05□□□□□ -0.32
SQSTM1-209ENST00000504627 LTAP01374 205 aa13.05□□□□□ -0.32
SQSTM1-209ENST00000504627 TMEM241Q24JQ0 296 aa13.05□□□□□ -0.32
SQSTM1-209ENST00000504627 C9orf47Q6ZRZ4 202 aa13.05□□□□□ -0.32
SQSTM1-209ENST00000504627 Q8NAQ8 132 aa13.05□□□□□ -0.32
SQSTM1-209ENST00000504627 TVP23CQ96ET8 276 aa13.05□□□□□ -0.32
SQSTM1-209ENST00000504627 LINC00479Q96M42 142 aa13.05□□□□□ -0.32
SQSTM1-209ENST00000504627 OR8A1Q8NGG7 326 aa13.04□□□□□ -0.32
SQSTM1-209ENST00000504627 OR10J6PQ8NGY7 276 aa13.04□□□□□ -0.32
SQSTM1-209ENST00000504627 C1QTNF4Q9BXJ3 329 aa13.04□□□□□ -0.32
SQSTM1-209ENST00000504627 SDF2L1Q9HCN8 221 aa13.04□□□□□ -0.32
SQSTM1-209ENST00000504627 PSG8Q9UQ74 426 aa13.04□□□□□ -0.32
SQSTM1-209ENST00000504627 NPIPB6E9PJ23 425 aa13.03□□□□□ -0.32
SQSTM1-209ENST00000504627 SNAPINO95295 136 aa13.03□□□□□ -0.32
SQSTM1-209ENST00000504627 FOXI2Q6ZQN5 318 aa13.03□□□□□ -0.32
SQSTM1-209ENST00000504627 PRNTQ86SH4 94 aa13.03□□□□□ -0.32
SQSTM1-209ENST00000504627 LINC01551Q86U37 167 aa13.03□□□□□ -0.32
SQSTM1-209ENST00000504627 BAGE2Q86Y30 109 aa13.03□□□□□ -0.32
SQSTM1-209ENST00000504627 VGLL1Q99990 258 aa13.03□□□□□ -0.32
SQSTM1-209ENST00000504627 PPP1R14DQ9NXH3 145 aa13.03□□□□□ -0.32
SQSTM1-209ENST00000504627 ZFP30Q9Y2G7 519 aa13.03□□□□□ -0.32
SQSTM1-209ENST00000504627 H3BMM0 161 aa13.02□□□□□ -0.33
SQSTM1-209ENST00000504627 RBMY1A1P0DJD3 496 aaKnown RBP13.02□□□□□ -0.33
SQSTM1-209ENST00000504627 RBMY1CP0DJD4 496 aa13.02□□□□□ -0.33
SQSTM1-209ENST00000504627 RPL23P62829 140 aaKnown RBP13.02□□□□□ -0.33
SQSTM1-209ENST00000504627 RBMY1FQ15415 496 aaKnown RBP13.02□□□□□ -0.33
SQSTM1-209ENST00000504627 TMEM78Q5T7P6 136 aa13.02□□□□□ -0.33
SQSTM1-209ENST00000504627 LGALS9CQ6DKI2 356 aa13.02□□□□□ -0.33
SQSTM1-209ENST00000504627 TMEM183AQ8IXX5 376 aa13.02□□□□□ -0.33
SQSTM1-209ENST00000504627 NDFIP1Q9BT67 221 aa13.02□□□□□ -0.33
SQSTM1-209ENST00000504627 XCL2Q9UBD3 114 aa13.02□□□□□ -0.33
SQSTM1-209ENST00000504627 LENEPQ9Y5L5 61 aa13.02□□□□□ -0.33
SQSTM1-209ENST00000504627 X6R8D5 127 aa13.02□□□□□ -0.33
SQSTM1-209ENST00000504627 M0R036 132 aa13.01□□□□□ -0.33
SQSTM1-209ENST00000504627 ZNF138P52744 262 aa13.01□□□□□ -0.33
SQSTM1-209ENST00000504627 HIST1H1AQ02539 215 aaPredicted RBP13.01□□□□□ -0.33
SQSTM1-209ENST00000504627 ADIRFQ15847 76 aa13.01□□□□□ -0.33
SQSTM1-209ENST00000504627 SAPCD1Q5SSQ6 148 aa13.01□□□□□ -0.33
SQSTM1-209ENST00000504627 EBLN2Q6P2I7 272 aa13.01□□□□□ -0.33
SQSTM1-209ENST00000504627 CSNK1G2-AS1Q8NCQ2 148 aa13.01□□□□□ -0.33
SQSTM1-209ENST00000504627 SGK494Q96LW2 274 aa13.01□□□□□ -0.33
SQSTM1-209ENST00000504627 LINC00477Q96M19 166 aa13.01□□□□□ -0.33
SQSTM1-209ENST00000504627 MLST8Q9BVC4 326 aa13.01□□□□□ -0.33
SQSTM1-209ENST00000504627 SAV1Q9H4B6 383 aaPredicted RBP13.01□□□□□ -0.33
SQSTM1-209ENST00000504627 BIN3Q9NQY0 253 aa13.01□□□□□ -0.33
SQSTM1-209ENST00000504627 TRBV7-9A0A0J9YWB2 115 aa13□□□□□ -0.33
SQSTM1-209ENST00000504627 A0A0J9YX75 114 aa13□□□□□ -0.33
SQSTM1-209ENST00000504627 PGPEP1LA6NFU8 196 aa13□□□□□ -0.33
SQSTM1-209ENST00000504627 DUSP14O95147 198 aaKnown RBP13□□□□□ -0.33
SQSTM1-209ENST00000504627 IGLV2-8P01709 118 aa13□□□□□ -0.33
SQSTM1-209ENST00000504627 PRB4P10163 310 aaPredicted RBP13□□□□□ -0.33
SQSTM1-209ENST00000504627 HLA-DRB4P13762 266 aa13□□□□□ -0.33
SQSTM1-209ENST00000504627 RHEBQ15382 184 aa13□□□□□ -0.33
SQSTM1-209ENST00000504627 COX8CQ7Z4L0 72 aa13□□□□□ -0.33
SQSTM1-209ENST00000504627 CLRN3Q8NCR9 226 aa13□□□□□ -0.33
SQSTM1-209ENST00000504627 Q8TAT8 98 aa13□□□□□ -0.33
SQSTM1-209ENST00000504627 ODF3Q96PU9 254 aa13□□□□□ -0.33
SQSTM1-209ENST00000504627 AGPAT4-IT1Q9H0P7 198 aa13□□□□□ -0.33
SQSTM1-209ENST00000504627 ZNF492Q9P255 531 aa13□□□□□ -0.33
SQSTM1-209ENST00000504627 HLA-DRB4X5D2U9 266 aa13□□□□□ -0.33
SQSTM1-209ENST00000504627 B4DEV8 164 aa12.99□□□□□ -0.33
SQSTM1-209ENST00000504627 IGLL5B9A064 214 aa12.99□□□□□ -0.33
SQSTM1-209ENST00000504627 F6UB75 175 aa12.99□□□□□ -0.33
SQSTM1-209ENST00000504627 IGKV3-20P01619 116 aa12.99□□□□□ -0.33
SQSTM1-209ENST00000504627 TCTAP57738 103 aa12.99□□□□□ -0.33
SQSTM1-209ENST00000504627 ERCC8Q13216 396 aa12.99□□□□□ -0.33
SQSTM1-209ENST00000504627 OCC1Q8TAD7 63 aa12.99□□□□□ -0.33
SQSTM1-209ENST00000504627 ISOC2Q96AB3 205 aa12.99□□□□□ -0.33
SQSTM1-209ENST00000504627 KMT2AQ03164 3969 aa12.98□□□□□ -0.33
SQSTM1-209ENST00000504627 K7EN84 100 aa12.98□□□□□ -0.33
SQSTM1-209ENST00000504627 GCGP01275 180 aa12.98□□□□□ -0.33
SQSTM1-209ENST00000504627 DEFB1P60022 68 aa12.98□□□□□ -0.33
SQSTM1-209ENST00000504627 GDF5OSQ5U4N7 250 aa12.98□□□□□ -0.33
SQSTM1-209ENST00000504627 NHLRC2Q8NBF2 726 aa12.98□□□□□ -0.33
SQSTM1-209ENST00000504627 TRAV10A0A0B4J240 114 aa12.97□□□□□ -0.33
SQSTM1-209ENST00000504627 A8MTW9 85 aa12.97□□□□□ -0.33
SQSTM1-209ENST00000504627 CT45A10P0DMU9 189 aa12.97□□□□□ -0.33
SQSTM1-209ENST00000504627 MGST1P10620 155 aaKnown RBP12.97□□□□□ -0.33
SQSTM1-209ENST00000504627 Q6ZTC4 211 aa12.97□□□□□ -0.33
SQSTM1-209ENST00000504627 OR4B1Q8NGF8 309 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms