RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 GTF2H5Q6ZYL4 71 aa12.47□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 NEGR1Q7Z3B1 354 aa12.47□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 Q8TAT8 98 aa12.47□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 RABAC1Q9UI14 185 aa12.47□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 MUC21A0A0G2JKD1 596 aa12.47□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 MUC21A0A140T8X8 626 aa12.47□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 MUC21Q5SSG8 566 aa12.47□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 UFSP1Q6NVU6 142 aa12.47□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 ERASQ7Z444 233 aa12.47□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 PIP4P2Q8N4L2 257 aa12.47□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 SIRPDQ9H106 197 aa12.47□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 LOC389332A0A1B0GUA5 103 aa12.46□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 NDUFS7O75251 213 aa12.46□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 GOSR1O95249 250 aa12.46□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 MRPL51Q4U2R6 128 aaKnown RBP12.46□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 AJUBAQ96IF1 538 aa12.46□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 PRELID3AQ96N28 172 aa12.46□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 GAGE10A6NGK3 116 aa12.46□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 NUDT3O95989 172 aa12.46□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 DTX2Q86UW9 622 aa12.46□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 IGHV3OR16-8A0A075B7F1 116 aa12.45□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 IGLC6P0CF74 106 aa12.45□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 COX6B1P14854 86 aa12.45□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 PAX8Q06710 450 aa12.45□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 FOXE3Q13461 319 aa12.45□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 SIGMAR1Q99720 223 aa12.45□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 WNK2Q9Y3S1 2297 aa12.45□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 IGHV3-35A0A0C4DH35 117 aa12.45□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 FBLL1A6NHQ2 334 aaKnown RBP12.45□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 ORMDL3Q8N138 153 aa12.45□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 TRAV8-6A0A0B4J262 113 aa12.44□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 ZNF502Q8TBZ5 544 aa12.44□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 PDZD2O15018 2839 aa12.44□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 AZU1P20160 251 aa12.43□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 KLK9Q2XQG4 91 aa12.43□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 FAM110DQ8TAY7 271 aaPredicted RBP12.43□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 ZFAND3Q9H8U3 227 aa12.43□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 KLK9Q9UKQ9 250 aa12.43□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 AKAP9Q99996 3911 aa12.43□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 SMKR1H3BMG3 65 aa12.43□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 COX8AP10176 69 aa12.43□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 PRAC2D3DTV9 90 aa12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 NPYP01303 97 aa12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 GPR183P32249 361 aa12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 RAB9AP51151 201 aa12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 CRYBA4P53673 196 aa12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 SRSF2Q01130 221 aaKnown RBP12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 C2orf91Q6ZV80 131 aa12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 A0A087X0K7 114 aa12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 SCGB2A1O75556 95 aa12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 FXYD7P58549 80 aa12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 ERCC8Q13216 396 aa12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 TWIST1Q15672 202 aa12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 C15orf32Q32M92 178 aa12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 OR8A1Q8NGG7 326 aa12.42□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 HIST1H1AQ02539 215 aaPredicted RBP12.41□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 MTURNQ8N3F0 131 aa12.41□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 MSRB1Q9NZV6 116 aa12.41□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 TEX15Q9BXT5 2789 aa12.41□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 BUB3O43684 328 aa12.41□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 RNF185Q96GF1 192 aa12.41□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 TRAV26-1A0A087WT03 109 aa12.4□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 CLPSL1A2RUU4 121 aa12.4□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 ATP6V0E1O15342 81 aa12.4□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 CLEC3BP05452 202 aa12.4□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 CKS2P33552 79 aa12.4□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 ECSCRQ19T08 205 aa12.4□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 LGALS9BQ3B8N2 356 aa12.4□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 TCTEX1D4Q5JR98 221 aa12.4□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 LGALS9CQ6DKI2 356 aa12.4□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.4□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 CNFNQ9BYD5 112 aa12.4□□□□□ -0.42
MSH5-SAPCD1-208ENST00000498473 FGF6P10767 208 aa12.39□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 UBE2E1P51965 193 aa12.39□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 CKS1BP61024 79 aa12.39□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 LINC01548A6NM66 108 aa12.39□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 HBDP02042 147 aa12.39□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 RNF182Q8N6D2 247 aa12.39□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 DPF1Q92782 380 aa12.39□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 CCDC140Q96MF4 163 aa12.39□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 PRRC2AP48634 2157 aaKnown RBP12.39□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 MYO9AB2RTY4 2548 aa12.38□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 FABP5P3A8MUU1 101 aa12.38□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 GAS8-AS1O95177 125 aa12.38□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 ORM1P02763 201 aa12.38□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 TLN2Q9Y4G6 2542 aa12.38□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 SNAI2O43623 268 aa12.38□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 SEC11AP67812 179 aa12.38□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 IGHV3-66A0A0C4DH42 116 aa12.37□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 G3V318 75 aa12.37□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 K7EP34 96 aa12.37□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 SAA4P35542 130 aa12.37□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 CACNG7P62955 275 aa12.37□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 LINC01559Q495D7 138 aa12.37□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 C7orf71A4D174 169 aa12.37□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 RBAKDNA6NC62 111 aa12.37□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 SMAGPQ0VAQ4 97 aa12.37□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 CLEC19AQ6UXS0 136 aa12.37□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 IL17RELQ6ZVW7 336 aa12.37□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 OR5A1Q8NGJ0 315 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms