RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 MRAPQ8TCY5 172 aa10.45□□□□□ -0.74
PTPRF-215ENST00000496447 IGHV7-4-1A0A0J9YVY3 117 aa10.45□□□□□ -0.74
PTPRF-215ENST00000496447 WNK2Q9Y3S1 2297 aa10.45□□□□□ -0.74
PTPRF-215ENST00000496447 CGB3P0DN86 165 aa10.45□□□□□ -0.74
PTPRF-215ENST00000496447 WT1-ASQ06250 92 aa10.45□□□□□ -0.74
PTPRF-215ENST00000496447 OVOL2Q9BRP0 275 aa10.45□□□□□ -0.74
PTPRF-215ENST00000496447 FANCMQ8IYD8 2048 aa10.45□□□□□ -0.74
PTPRF-215ENST00000496447 H3BMM0 161 aa10.44□□□□□ -0.74
PTPRF-215ENST00000496447 ZNF134P52741 427 aa10.44□□□□□ -0.74
PTPRF-215ENST00000496447 UBE2WQ96B02 151 aa10.44□□□□□ -0.74
PTPRF-215ENST00000496447 H3BRN7 92 aa10.44□□□□□ -0.74
PTPRF-215ENST00000496447 IGFL2Q6UWQ7 119 aa10.44□□□□□ -0.74
PTPRF-215ENST00000496447 ZNF492Q9P255 531 aa10.44□□□□□ -0.74
PTPRF-215ENST00000496447 TMEM213A2RRL7 107 aa10.44□□□□□ -0.74
PTPRF-215ENST00000496447 ARFGEF3Q5TH69 2177 aa10.44□□□□□ -0.74
PTPRF-215ENST00000496447 H3BUA1 57 aa10.44□□□□□ -0.74
PTPRF-215ENST00000496447 TAL2Q16559 108 aa10.44□□□□□ -0.74
PTPRF-215ENST00000496447 B5MCH6 92 aa10.43□□□□□ -0.74
PTPRF-215ENST00000496447 I3L3M4 83 aa10.43□□□□□ -0.74
PTPRF-215ENST00000496447 ZNRF2Q8NHG8 242 aa10.43□□□□□ -0.74
PTPRF-215ENST00000496447 RMI2Q96E14 147 aa10.43□□□□□ -0.74
PTPRF-215ENST00000496447 C1orf147Q96MC9 270 aaPredicted RBP10.43□□□□□ -0.74
PTPRF-215ENST00000496447 ANXA2RQ3ZCQ2 193 aa10.43□□□□□ -0.74
PTPRF-215ENST00000496447 TP53TG1Q9Y2A0 90 aa10.43□□□□□ -0.74
PTPRF-215ENST00000496447 IGHV4-61A0A0C4DH41 118 aa10.43□□□□□ -0.74
PTPRF-215ENST00000496447 LGALS9BQ3B8N2 356 aa10.43□□□□□ -0.74
PTPRF-215ENST00000496447 LGALS9CQ6DKI2 356 aa10.43□□□□□ -0.74
PTPRF-215ENST00000496447 RSPO1Q2MKA7 263 aaPredicted RBP10.43□□□□□ -0.74
PTPRF-215ENST00000496447 TSC2P49815 1807 aa10.42□□□□□ -0.74
PTPRF-215ENST00000496447 CT83Q5H943 113 aa10.42□□□□□ -0.74
PTPRF-215ENST00000496447 PYGO2Q9BRQ0 406 aa10.42□□□□□ -0.74
PTPRF-215ENST00000496447 IGHV4-30-2A0A087WSY4 118 aa10.42□□□□□ -0.74
PTPRF-215ENST00000496447 VWC2Q2TAL6 325 aa10.42□□□□□ -0.74
PTPRF-215ENST00000496447 TMEM243Q9BU79 118 aa10.42□□□□□ -0.74
PTPRF-215ENST00000496447 PRSS46E5RG02 174 aa10.42□□□□□ -0.74
PTPRF-215ENST00000496447 PLXNA4Q9HCM2 1894 aa10.42□□□□□ -0.74
PTPRF-215ENST00000496447 CCL24O00175 119 aa10.42□□□□□ -0.74
PTPRF-215ENST00000496447 CTSZQ9UBR2 303 aa10.42□□□□□ -0.74
PTPRF-215ENST00000496447 IGHV3-38A0A0C4DH36 116 aa10.41□□□□□ -0.74
PTPRF-215ENST00000496447 HIST1H4AP62805 103 aaKnown RBP10.41□□□□□ -0.74
PTPRF-215ENST00000496447 ZNF726P1Q15940 193 aa10.41□□□□□ -0.74
PTPRF-215ENST00000496447 HAPLN4Q86UW8 402 aa10.41□□□□□ -0.74
PTPRF-215ENST00000496447 V9GYV3 84 aa10.41□□□□□ -0.74
PTPRF-215ENST00000496447 FRMPD3Q5JV73 1810 aa10.41□□□□□ -0.74
PTPRF-215ENST00000496447 IGKV1-39P01597 117 aa10.41□□□□□ -0.74
PTPRF-215ENST00000496447 IGKV1D-39P04432 117 aa10.41□□□□□ -0.74
PTPRF-215ENST00000496447 TMEM14CQ9P0S9 112 aa10.41□□□□□ -0.74
PTPRF-215ENST00000496447 IGF2BP2-AS1Q96M15 143 aa10.41□□□□□ -0.74
PTPRF-215ENST00000496447 TRACP01848 142 aa10.4□□□□□ -0.74
PTPRF-215ENST00000496447 HOXD3P31249 432 aaPredicted RBP10.4□□□□□ -0.74
PTPRF-215ENST00000496447 NKAPP1Q8N9T2 125 aa10.4□□□□□ -0.74
PTPRF-215ENST00000496447 ZNF625Q96I27 306 aaPredicted RBP10.4□□□□□ -0.74
PTPRF-215ENST00000496447 PRR25Q96S07 402 aa10.4□□□□□ -0.74
PTPRF-215ENST00000496447 A0A096LPF7 62 aa10.4□□□□□ -0.74
PTPRF-215ENST00000496447 SMIM27A0A1W2PRY6 76 aa10.4□□□□□ -0.74
PTPRF-215ENST00000496447 CGB7P0DN87 165 aa10.4□□□□□ -0.74
PTPRF-215ENST00000496447 SMIM20Q8N5G0 67 aa10.4□□□□□ -0.74
PTPRF-215ENST00000496447 THAP8Q8NA92 274 aa10.4□□□□□ -0.74
PTPRF-215ENST00000496447 PRSS47A8MTI9 375 aa10.4□□□□□ -0.74
PTPRF-215ENST00000496447 GAGE2AQ6NT46 116 aa10.4□□□□□ -0.74
PTPRF-215ENST00000496447 BOD1L2Q8IYS8 172 aa10.4□□□□□ -0.74
PTPRF-215ENST00000496447 CEND1Q8N111 149 aa10.4□□□□□ -0.74
PTPRF-215ENST00000496447 PTPRDP23468 1912 aa10.4□□□□□ -0.75
PTPRF-215ENST00000496447 Q6ZVH6 145 aa10.4□□□□□ -0.75
PTPRF-215ENST00000496447 PMVKQ15126 192 aa10.39□□□□□ -0.75
PTPRF-215ENST00000496447 TMEM141Q96I45 108 aa10.39□□□□□ -0.75
PTPRF-215ENST00000496447 SDHAF1A6NFY7 115 aa10.39□□□□□ -0.75
PTPRF-215ENST00000496447 IGLC1P0CG04 106 aa10.39□□□□□ -0.75
PTPRF-215ENST00000496447 DEFB136Q30KP8 78 aa10.39□□□□□ -0.75
PTPRF-215ENST00000496447 C2orf66Q6UXQ4 117 aa10.39□□□□□ -0.75
PTPRF-215ENST00000496447 FAM231DQ6ZW35 169 aa10.39□□□□□ -0.75
PTPRF-215ENST00000496447 POU2AF1Q16633 256 aa10.39□□□□□ -0.75
PTPRF-215ENST00000496447 IGHV4-38-2P0DP08 117 aa10.39□□□□□ -0.75
PTPRF-215ENST00000496447 VWC2LB2RUY7 222 aa10.38□□□□□ -0.75
PTPRF-215ENST00000496447 FAM104BQ5XKR9 115 aa10.38□□□□□ -0.75
PTPRF-215ENST00000496447 C8orf31Q8N9H6 132 aa10.38□□□□□ -0.75
PTPRF-215ENST00000496447 H3BMG7 143 aa10.38□□□□□ -0.75
PTPRF-215ENST00000496447 ADORA2A-AS1P86434 159 aa10.38□□□□□ -0.75
PTPRF-215ENST00000496447 C9orf66Q5T8R8 295 aa10.38□□□□□ -0.75
PTPRF-215ENST00000496447 FOXI2Q6ZQN5 318 aa10.38□□□□□ -0.75
PTPRF-215ENST00000496447 IL15RAQ13261 267 aa10.38□□□□□ -0.75
PTPRF-215ENST00000496447 TEX48A0A1B0GUV7 120 aa10.38□□□□□ -0.75
PTPRF-215ENST00000496447 PFN2P35080 140 aa10.38□□□□□ -0.75
PTPRF-215ENST00000496447 NRGNQ92686 78 aa10.38□□□□□ -0.75
PTPRF-215ENST00000496447 PCNX1Q96RV3 2341 aa10.38□□□□□ -0.75
PTPRF-215ENST00000496447 CENPVL3A0A0U1RRI6 287 aa10.37□□□□□ -0.75
PTPRF-215ENST00000496447 Q8N8P6 123 aa10.37□□□□□ -0.75
PTPRF-215ENST00000496447 DOCK10Q96BY6 2186 aa10.37□□□□□ -0.75
PTPRF-215ENST00000496447 NLRC5Q86WI3 1866 aa10.37□□□□□ -0.75
PTPRF-215ENST00000496447 ZNF114Q8NC26 417 aa10.37□□□□□ -0.75
PTPRF-215ENST00000496447 OR11H6Q8NGC7 330 aa10.37□□□□□ -0.75
PTPRF-215ENST00000496447 TRAV26-2A0A0B4J265 109 aa10.37□□□□□ -0.75
PTPRF-215ENST00000496447 DNAJC30Q96LL9 226 aa10.37□□□□□ -0.75
PTPRF-215ENST00000496447 G3V4G9 280 aa10.36□□□□□ -0.75
PTPRF-215ENST00000496447 INAFM2P0DMQ5 153 aa10.36□□□□□ -0.75
PTPRF-215ENST00000496447 ANGP03950 147 aaKnown RBP10.36□□□□□ -0.75
PTPRF-215ENST00000496447 FOXE3Q13461 319 aa10.36□□□□□ -0.75
PTPRF-215ENST00000496447 CYYR1Q96J86 154 aa10.36□□□□□ -0.75
PTPRF-215ENST00000496447 TRAV8-3A0A0A6YYJ7 113 aa10.36□□□□□ -0.75
PTPRF-215ENST00000496447 HLA-DRB4P13762 266 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms