RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.71□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 Q6ZQT7 251 aa10.71□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 HIST1H2BHQ93079 126 aa10.71□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 HIST1H2BNQ99877 126 aa10.71□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 HIST1H2BMQ99879 126 aa10.71□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 SHISA9B4DS77 424 aa10.7□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 MGAMO43451 1857 aa10.7□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 TCF15Q12870 199 aa10.7□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 IFI6P09912 130 aa10.7□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 IGFBP3P17936 291 aaPredicted RBP10.7□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 HERV-K104P63124 156 aa10.7□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 HGFACQ04756 655 aa10.7□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 STPG4Q8N801 248 aa10.7□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 C8orf49Q96NF6 230 aa10.7□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 TP53TG1Q9Y2A0 90 aa10.7□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 LINC01551Q86U37 167 aa10.7□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 COL5A3P25940 1745 aaPredicted RBP10.69□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 TRAV26-2A0A0B4J265 109 aa10.69□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 LINC00473A8K010 186 aa10.69□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 NTF4P34130 210 aa10.69□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 NEGR1Q7Z3B1 354 aa10.69□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 GAFA1Q96PS6 74 aa10.69□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 TMEM242Q9NWH2 141 aa10.69□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 IGLV3-12A0A075B6K2 115 aa10.69□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 IGKV1-27A0A075B6S5 117 aa10.68□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 CFHR4Q92496 578 aa10.68□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 FAM104BQ5XKR9 115 aa10.68□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 ESM1Q9NQ30 184 aa10.68□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.68□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 HOXB4P17483 251 aaPredicted RBP10.68□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 MST1P26927 711 aa10.67□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 DEFB136Q30KP8 78 aa10.67□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 NOP10Q9NPE3 64 aaKnown RBP10.67□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 ZNF664Q8N3J9 261 aa10.67□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 WDR87Q6ZQQ6 2873 aa10.67□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 HLA-DRB4P13762 266 aa10.67□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 HLA-DRB4X5D2U9 266 aa10.67□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 COL4A5P29400 1685 aa10.67□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 IGLV3-19P01714 112 aa10.67□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 WDR83OSQ9Y284 106 aa10.67□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 RPRMLQ8N4K4 120 aa10.67□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 NTN3O00634 580 aaPredicted RBP10.67□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 KIR3DS1Q14943 382 aa10.66□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 SMPXQ9UHP9 88 aa10.66□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 MUSTN1Q8IVN3 82 aa10.66□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 KIR2DL5BQ8NHK3 375 aa10.66□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 CXCL1P09341 107 aa10.66□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 CARHSP1Q9Y2V2 147 aaKnown RBP10.66□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 IGKV1D-17A0A075B6S4 117 aa10.66□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 ACANP16112 2415 aa10.66□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 H0YIZ8 118 aa10.66□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 UBE2CO00762 179 aa10.66□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 CTSGP08311 255 aa10.66□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 C5orf63A6NC05 138 aa10.65□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 PLA2G1BP04054 148 aaKnown RBP10.65□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 IGLV10-54A0A075B6I4 117 aa10.65□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 F8W735 103 aaPredicted RBP10.65□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 TMEM213A2RRL7 107 aa10.65□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 WFDC11Q8NEX6 87 aa10.65□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 PRR15LQ9BU68 103 aa10.65□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 GAGE12HA6NDE8 117 aa10.65□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 OOSP1A8MZH6 123 aa10.65□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 HIST1H2BLQ99880 126 aa10.65□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 ZNF581Q9P0T4 197 aa10.65□□□□□ -0.7
NPHP3-ACAD11-201ENST00000471702 IGHV1-69DA0A0B4J2H0 117 aa10.65□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 IGHV1-69P01742 117 aa10.65□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 PRSS57Q6UWY2 283 aa10.65□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 LINC00114Q6XXX2 140 aa10.65□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 TRAV13-2A0A0B4J235 113 aa10.64□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 UBE2D1P51668 147 aa10.64□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 ASPHD1Q5U4P2 390 aa10.64□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 BRK1Q8WUW1 75 aa10.64□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 ETV2O00321 342 aaPredicted RBP10.64□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 SLAQ13239 276 aa10.64□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 TEX36Q5VZQ5 186 aa10.64□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 I3L3M4 83 aa10.64□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 LAIR2Q6ISS4 152 aa10.64□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 ADAMTS7Q9UKP4 1686 aa10.64□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 USP17L23D6RBM5 183 aa10.64□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 DLEU1O43261 78 aa10.64□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 LRRC37AA6NMS7 1700 aa10.63□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 RNF138Q8WVD3 245 aa10.63□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 COL24A1Q17RW2 1714 aa10.63□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 NEUROG3Q9Y4Z2 214 aa10.63□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 C2CD3Q4AC94 2353 aa10.63□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 PRYO14603 147 aa10.63□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 CDKN1BP46527 198 aa10.62□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 PIEZO1Q92508 2521 aa10.62□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 SYS1-DBNDD2H3BUS1 97 aa10.62□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 NDUFB8O95169 186 aa10.62□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 GATA3P23771 443 aa10.62□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 MRPL36Q9P0J6 103 aaKnown RBP10.62□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 A8MWP6 167 aa10.62□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 K7ENP7 123 aa10.62□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 F8P00451 2351 aa10.62□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 IFITM1P13164 125 aa10.62□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 C8orf86Q6ZUL3 223 aa10.62□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 CCL24O00175 119 aa10.61□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 FOXE3Q13461 319 aa10.61□□□□□ -0.71
NPHP3-ACAD11-201ENST00000471702 LINC01559Q495D7 138 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 252.7 ms