RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 UNQ9165/PRO28630Q6UXU0 137 aa12.23□□□□□ -0.45
SHQ1-202ENST00000444040 CCL19Q99731 98 aa12.23□□□□□ -0.45
SHQ1-202ENST00000444040 IGHV7-4-1A0A0J9YVY3 117 aa12.22□□□□□ -0.45
SHQ1-202ENST00000444040 NUDT3O95989 172 aa12.22□□□□□ -0.45
SHQ1-202ENST00000444040 Q6ZQT7 251 aa12.22□□□□□ -0.45
SHQ1-202ENST00000444040 SMAD7O15105 426 aaKnown RBP12.22□□□□□ -0.45
SHQ1-202ENST00000444040 BVES-AS1Q5T3Y7 98 aa12.22□□□□□ -0.45
SHQ1-202ENST00000444040 GPHB5Q86YW7 130 aa12.22□□□□□ -0.45
SHQ1-202ENST00000444040 DPF1Q92782 380 aa12.22□□□□□ -0.45
SHQ1-202ENST00000444040 C16orf92Q96LL3 132 aa12.22□□□□□ -0.45
SHQ1-202ENST00000444040 C20orf173Q96LM9 149 aa12.22□□□□□ -0.45
SHQ1-202ENST00000444040 MAP1LC3AQ9H492 121 aa12.22□□□□□ -0.45
SHQ1-202ENST00000444040 NDUFS8O00217 210 aa12.21□□□□□ -0.45
SHQ1-202ENST00000444040 TNFRSF6BO95407 300 aa12.21□□□□□ -0.45
SHQ1-202ENST00000444040 BRI3O95415 125 aa12.21□□□□□ -0.45
SHQ1-202ENST00000444040 IGHG2P01859 326 aa12.21□□□□□ -0.45
SHQ1-202ENST00000444040 CACNG7P62955 275 aa12.21□□□□□ -0.46
SHQ1-202ENST00000444040 FOXE3Q13461 319 aa12.21□□□□□ -0.46
SHQ1-202ENST00000444040 LY6EQ16553 131 aa12.21□□□□□ -0.46
SHQ1-202ENST00000444040 C9orf139Q6ZV77 190 aa12.21□□□□□ -0.46
SHQ1-202ENST00000444040 IFI27L1Q96BM0 104 aa12.21□□□□□ -0.46
SHQ1-202ENST00000444040 NDUFA4O00483 81 aa12.2□□□□□ -0.46
SHQ1-202ENST00000444040 ZNF738Q8NE65 137 aa12.2□□□□□ -0.46
SHQ1-202ENST00000444040 IGHV4-30-2A0A087WSY4 118 aa12.2□□□□□ -0.46
SHQ1-202ENST00000444040 A6NDX4 124 aa12.2□□□□□ -0.46
SHQ1-202ENST00000444040 GATA1P15976 413 aaPredicted RBP12.2□□□□□ -0.46
SHQ1-202ENST00000444040 ANKRD39Q53RE8 183 aa12.2□□□□□ -0.46
SHQ1-202ENST00000444040 C2orf91Q6ZV80 131 aa12.2□□□□□ -0.46
SHQ1-202ENST00000444040 PRR9Q5T870 116 aa12.19□□□□□ -0.46
SHQ1-202ENST00000444040 H3BUA1 57 aa12.19□□□□□ -0.46
SHQ1-202ENST00000444040 H3BUX3 64 aa12.19□□□□□ -0.46
SHQ1-202ENST00000444040 FGF6P10767 208 aa12.19□□□□□ -0.46
SHQ1-202ENST00000444040 EVI2AP22794 236 aa12.19□□□□□ -0.46
SHQ1-202ENST00000444040 C12orf54Q6X4T0 127 aa12.19□□□□□ -0.46
SHQ1-202ENST00000444040 LENEPQ9Y5L5 61 aa12.19□□□□□ -0.46
SHQ1-202ENST00000444040 SOCS3O14543 225 aa12.19□□□□□ -0.46
SHQ1-202ENST00000444040 CLEC2AQ6UVW9 174 aa12.19□□□□□ -0.46
SHQ1-202ENST00000444040 USMG5Q96IX5 58 aa12.19□□□□□ -0.46
SHQ1-202ENST00000444040 KLK15Q9H2R5 256 aa12.19□□□□□ -0.46
SHQ1-202ENST00000444040 IGHV4-4A0A075B6R2 117 aa12.18□□□□□ -0.46
SHQ1-202ENST00000444040 SNAI2O43623 268 aa12.18□□□□□ -0.46
SHQ1-202ENST00000444040 NXT2Q9NPJ8 142 aaKnown RBP12.18□□□□□ -0.46
SHQ1-202ENST00000444040 CELSR1Q9NYQ6 3014 aa12.18□□□□□ -0.46
SHQ1-202ENST00000444040 CCL25O15444 150 aa12.18□□□□□ -0.46
SHQ1-202ENST00000444040 ATP5J2P56134 94 aa12.18□□□□□ -0.46
SHQ1-202ENST00000444040 BLCAPP62952 87 aa12.18□□□□□ -0.46
SHQ1-202ENST00000444040 Q6ZS46 218 aa12.18□□□□□ -0.46
SHQ1-202ENST00000444040 IGLV2-18A0A075B6J9 118 aa12.17□□□□□ -0.46
SHQ1-202ENST00000444040 FCER1GP30273 86 aa12.17□□□□□ -0.46
SHQ1-202ENST00000444040 OR1N2Q8NGR9 330 aa12.17□□□□□ -0.46
SHQ1-202ENST00000444040 IGHV3-11P01762 117 aa12.17□□□□□ -0.46
SHQ1-202ENST00000444040 DEFB125Q8N687 156 aa12.17□□□□□ -0.46
SHQ1-202ENST00000444040 TAX1BP3O14907 124 aa12.16□□□□□ -0.46
SHQ1-202ENST00000444040 MSMBP08118 114 aa12.16□□□□□ -0.46
SHQ1-202ENST00000444040 LEPP41159 167 aa12.16□□□□□ -0.46
SHQ1-202ENST00000444040 WFDC3Q8IUB2 231 aa12.16□□□□□ -0.46
SHQ1-202ENST00000444040 ZFAND2AQ8N6M9 145 aa12.16□□□□□ -0.46
SHQ1-202ENST00000444040 LINC00477Q96M19 166 aa12.16□□□□□ -0.46
SHQ1-202ENST00000444040 UBE2V1Q13404 147 aa12.15□□□□□ -0.46
SHQ1-202ENST00000444040 Q8N8P6 123 aa12.15□□□□□ -0.46
SHQ1-202ENST00000444040 NRACQ8N912 160 aa12.15□□□□□ -0.46
SHQ1-202ENST00000444040 OR2K2Q8NGT1 345 aa12.15□□□□□ -0.46
SHQ1-202ENST00000444040 PKD1L2Q7Z442 2459 aa12.15□□□□□ -0.46
SHQ1-202ENST00000444040 PRSS47A8MTI9 375 aa12.15□□□□□ -0.46
SHQ1-202ENST00000444040 C18orf15Q96N68 181 aa12.15□□□□□ -0.46
SHQ1-202ENST00000444040 DKK2Q9UBU2 259 aa12.15□□□□□ -0.46
SHQ1-202ENST00000444040 AVPP01185 164 aa12.15□□□□□ -0.47
SHQ1-202ENST00000444040 IGLV1-40P01703 118 aa12.15□□□□□ -0.47
SHQ1-202ENST00000444040 PTTG1IPP53801 180 aa12.15□□□□□ -0.47
SHQ1-202ENST00000444040 BOD1L2Q8IYS8 172 aa12.15□□□□□ -0.47
SHQ1-202ENST00000444040 OR4X2Q8NGF9 303 aa12.15□□□□□ -0.47
SHQ1-202ENST00000444040 PF4V1P10720 104 aa12.14□□□□□ -0.47
SHQ1-202ENST00000444040 LCNL1Q6ZST4 164 aa12.14□□□□□ -0.47
SHQ1-202ENST00000444040 COL12A1Q99715 3063 aa12.14□□□□□ -0.47
SHQ1-202ENST00000444040 OVOL1O14753 267 aa12.14□□□□□ -0.47
SHQ1-202ENST00000444040 FOSL1P15407 271 aa12.14□□□□□ -0.47
SHQ1-202ENST00000444040 DEFB1P60022 68 aa12.14□□□□□ -0.47
SHQ1-202ENST00000444040 SPANXN1Q5VSR9 72 aa12.14□□□□□ -0.47
SHQ1-202ENST00000444040 SMIM15Q7Z3B0 74 aa12.14□□□□□ -0.47
SHQ1-202ENST00000444040 SPTAN1Q13813 2472 aaKnown RBP12.13□□□□□ -0.47
SHQ1-202ENST00000444040 TRAV26-2A0A0B4J265 109 aa12.13□□□□□ -0.47
SHQ1-202ENST00000444040 H3BVH4 76 aa12.13□□□□□ -0.47
SHQ1-202ENST00000444040 CFHR3Q02985 330 aa12.13□□□□□ -0.47
SHQ1-202ENST00000444040 OR10J6PQ8NGY7 276 aa12.13□□□□□ -0.47
SHQ1-202ENST00000444040 TMEM158Q8WZ71 300 aa12.13□□□□□ -0.47
SHQ1-202ENST00000444040 FAM19A4Q96LR4 140 aa12.13□□□□□ -0.47
SHQ1-202ENST00000444040 ZMAT4Q9H898 229 aa12.13□□□□□ -0.47
SHQ1-202ENST00000444040 UFC1Q9Y3C8 167 aa12.13□□□□□ -0.47
SHQ1-202ENST00000444040 ODF1Q14990 250 aa12.12□□□□□ -0.47
SHQ1-202ENST00000444040 J3KRW8 73 aa12.12□□□□□ -0.47
SHQ1-202ENST00000444040 CD5LO43866 347 aa12.11□□□□□ -0.47
SHQ1-202ENST00000444040 CFAP46Q8IYW2 2715 aa12.11□□□□□ -0.47
SHQ1-202ENST00000444040 TRAV21A0A0B4J279 112 aa12.11□□□□□ -0.47
SHQ1-202ENST00000444040 TCTAP57738 103 aa12.11□□□□□ -0.47
SHQ1-202ENST00000444040 RHPN1-AS1Q9BWJ2 59 aa12.11□□□□□ -0.47
SHQ1-202ENST00000444040 A0A0G2JLM5 398 aa12.1□□□□□ -0.47
SHQ1-202ENST00000444040 B4DSR2 109 aa12.1□□□□□ -0.47
SHQ1-202ENST00000444040 TM4SF20Q53R12 229 aa12.1□□□□□ -0.47
SHQ1-202ENST00000444040 TMEM97Q5BJF2 176 aa12.1□□□□□ -0.47
SHQ1-202ENST00000444040 APRG1Q8IVJ8 170 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms