RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 GATA3P23771 443 aa6.46□□□□□ -1.38
TMEM39A-202ENST00000438581 RNASE4P34096 147 aaKnown RBP6.46□□□□□ -1.38
TMEM39A-202ENST00000438581 RPP21Q9H633 154 aaKnown RBP6.46□□□□□ -1.38
TMEM39A-202ENST00000438581 FLNBO75369 2602 aaKnown RBP6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 DPM2O94777 84 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 ASIPP42127 132 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 RITA1Q96K30 269 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 SLC50A1Q9BRV3 221 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 KLK15Q9H2R5 256 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 ZFP36P26651 326 aaKnown RBP6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 HBBP68871 147 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 GFI1BQ5VTD9 330 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 SLC25A34Q6PIV7 304 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 MS4A6AQ9H2W1 248 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 DOPEY1Q5JWR5 2465 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 A0A087WX48 190 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 A0A1B0GUT8 65 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 C9JAW5 83 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 RRN3P1Q2M238 152 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 C1orf195Q5TG92 126 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 STHQ8IWL8 128 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 CIARTQ8N365 385 aaPredicted RBP6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 Q8TAT8 98 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 JMJD8Q96S16 334 aa6.45□□□□□ -1.38
TMEM39A-202ENST00000438581 OR10J3Q5JRS4 329 aa6.44□□□□□ -1.38
TMEM39A-202ENST00000438581 PRADC1Q9BSG0 188 aa6.44□□□□□ -1.38
TMEM39A-202ENST00000438581 PEMTQ9UBM1 199 aa6.44□□□□□ -1.38
TMEM39A-202ENST00000438581 IGHV4-38-2P0DP08 117 aa6.44□□□□□ -1.38
TMEM39A-202ENST00000438581 CDSNQ15517 529 aa6.44□□□□□ -1.38
TMEM39A-202ENST00000438581 SPCS1Q9Y6A9 102 aa6.44□□□□□ -1.38
TMEM39A-202ENST00000438581 TRBV7-1A0A0A6YYK4 115 aa6.44□□□□□ -1.38
TMEM39A-202ENST00000438581 OR4C46A6NHA9 309 aa6.44□□□□□ -1.38
TMEM39A-202ENST00000438581 HOXB4P17483 251 aaPredicted RBP6.44□□□□□ -1.38
TMEM39A-202ENST00000438581 SYNJ2BPP57105 145 aa6.44□□□□□ -1.38
TMEM39A-202ENST00000438581 KLHL30-AS1Q8NEE0 82 aa6.44□□□□□ -1.38
TMEM39A-202ENST00000438581 OR10AG1Q8NH19 301 aa6.44□□□□□ -1.38
TMEM39A-202ENST00000438581 TRBV20OR9-2A0A075B6H5 130 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 TRAV9-2A0A087WT02 112 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 TCRAP04437 139 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 DAZAP2Q15038 168 aaPredicted RBP6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 ZNF726P1Q15940 193 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 TMEM136Q6ZRR5 245 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 IGHV4-59P01825 116 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 ZNF56Q15929 161 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 DEFB112Q30KQ8 113 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 FAM110DQ8TAY7 271 aaPredicted RBP6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 MYOZ3Q8TDC0 251 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 C10orf105Q8TEF2 133 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 RHPN1-AS1Q9BWJ2 59 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 PROP1O75360 226 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 USMG5Q96IX5 58 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 COL4A2P08572 1712 aa6.43□□□□□ -1.38
TMEM39A-202ENST00000438581 LEPROTL1O95214 131 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 IGLV2-14P01704 120 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 OR11H6Q8NGC7 330 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 OSTCQ9NRP0 149 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 A0A087X0K7 114 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 NCR2O95944 276 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 CXCL1P09341 107 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 CD7P09564 240 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 DEFB113Q30KQ7 82 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 FAM90A2PQ658T7 463 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 LINC01587Q99440 93 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 MEIG1Q5JSS6 88 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 ACTL10Q5JWF8 245 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 Q8N7P7 452 aa6.42□□□□□ -1.38
TMEM39A-202ENST00000438581 HOXA3O43365 443 aaPredicted RBP6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 BLCAPP62952 87 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 UFSP1Q6NVU6 142 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 PYGO2Q9BRQ0 406 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 TAX1BP3O14907 124 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 IGLV1-47P01700 117 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 FOXE3Q13461 319 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 LCN12Q6JVE5 192 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 RASL11AQ6T310 242 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 FAM19A2Q8N3H0 131 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 SHANK2-AS3Q9BTD1 123 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 HCFC1P51610 2035 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 WDFY4Q6ZS81 3184 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 IZUMO1RA6ND01 250 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 ODF3L1Q8IXM7 274 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 ATOH7Q8N100 152 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 AP5S1Q9NUS5 200 aa6.41□□□□□ -1.38
TMEM39A-202ENST00000438581 COL5A1P20908 1838 aaPredicted RBP6.4□□□□□ -1.38
TMEM39A-202ENST00000438581 FAM223BA6NKX1 122 aa6.4□□□□□ -1.38
TMEM39A-202ENST00000438581 C4orf48Q5BLP8 95 aa6.4□□□□□ -1.38
TMEM39A-202ENST00000438581 HIST2H2BCQ6DN03 193 aa6.4□□□□□ -1.38
TMEM39A-202ENST00000438581 FAM223AQ8IWN6 122 aa6.4□□□□□ -1.38
TMEM39A-202ENST00000438581 RNF182Q8N6D2 247 aa6.4□□□□□ -1.38
TMEM39A-202ENST00000438581 PRELID3AQ96N28 172 aa6.4□□□□□ -1.38
TMEM39A-202ENST00000438581 C18orf15Q96N68 181 aa6.4□□□□□ -1.38
TMEM39A-202ENST00000438581 E7EUB6 86 aa6.4□□□□□ -1.38
TMEM39A-202ENST00000438581 BAALCQ8WXS3 180 aa6.4□□□□□ -1.38
TMEM39A-202ENST00000438581 CGB3P0DN86 165 aa6.4□□□□□ -1.39
TMEM39A-202ENST00000438581 CGB7P0DN87 165 aa6.4□□□□□ -1.39
TMEM39A-202ENST00000438581 FXYD7P58549 80 aa6.4□□□□□ -1.39
TMEM39A-202ENST00000438581 C10orf126Q8N4M7 172 aa6.4□□□□□ -1.39
TMEM39A-202ENST00000438581 DAZ1Q9NQZ3 744 aaKnown RBP6.4□□□□□ -1.39
TMEM39A-202ENST00000438581 KMT2EQ8IZD2 1858 aa6.39□□□□□ -1.39
TMEM39A-202ENST00000438581 YPEL3P61236 119 aaPredicted RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms