RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CLEC5AQ9NY25 188 aa11.39□□□□□ -0.59
USP4-203ENST00000415188 IGKV2-40A0A087WW87 121 aaPredicted RBP11.38□□□□□ -0.59
USP4-203ENST00000415188 C2orf70A6NJV1 201 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 EREGO14944 169 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 IGKV2D-40P01614 121 aaPredicted RBP11.38□□□□□ -0.59
USP4-203ENST00000415188 ATP5G2Q06055 141 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 TDRG1Q3Y452 100 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 BRD3OSQ6XYD6 125 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 ZNF705AQ6ZN79 300 aaPredicted RBP11.38□□□□□ -0.59
USP4-203ENST00000415188 C9orf139Q6ZV77 190 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 METTL26Q96S19 204 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 SNHG12Q9BXW3 62 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 UQCR10Q9UDW1 63 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 TRAV41A0A0B4J266 112 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 A0A1B0GV90 55 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 H3BUA1 57 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 CRXO43186 299 aaPredicted RBP11.38□□□□□ -0.59
USP4-203ENST00000415188 RNASE1P07998 156 aaKnown RBP11.38□□□□□ -0.59
USP4-203ENST00000415188 LCN12Q6JVE5 192 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 TMEM70Q9BUB7 260 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 U3KQE9 123 aa11.38□□□□□ -0.59
USP4-203ENST00000415188 CLPSL1A2RUU4 121 aa11.37□□□□□ -0.59
USP4-203ENST00000415188 G3V318 75 aa11.37□□□□□ -0.59
USP4-203ENST00000415188 IGHG4P01861 327 aa11.37□□□□□ -0.59
USP4-203ENST00000415188 DEFB112Q30KQ8 113 aa11.37□□□□□ -0.59
USP4-203ENST00000415188 EBLN2Q6P2I7 272 aa11.37□□□□□ -0.59
USP4-203ENST00000415188 CLEC19AQ6UXS0 136 aa11.37□□□□□ -0.59
USP4-203ENST00000415188 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.37□□□□□ -0.59
USP4-203ENST00000415188 TRAV9-2A0A087WT02 112 aa11.36□□□□□ -0.59
USP4-203ENST00000415188 IGHV1-24A0A0C4DH33 117 aa11.36□□□□□ -0.59
USP4-203ENST00000415188 NUTF2P61970 127 aaKnown RBP11.36□□□□□ -0.59
USP4-203ENST00000415188 ZNF747Q9BV97 191 aa11.36□□□□□ -0.59
USP4-203ENST00000415188 U3KQK5 164 aa11.36□□□□□ -0.59
USP4-203ENST00000415188 TRRAPQ9Y4A5 3859 aa11.35□□□□□ -0.59
USP4-203ENST00000415188 HOXA3O43365 443 aaPredicted RBP11.35□□□□□ -0.59
USP4-203ENST00000415188 LEPROTL1O95214 131 aa11.35□□□□□ -0.59
USP4-203ENST00000415188 IGF1P05019 195 aa11.35□□□□□ -0.59
USP4-203ENST00000415188 LYZL1Q6UWQ5 148 aa11.35□□□□□ -0.59
USP4-203ENST00000415188 PIFOQ8TCI5 191 aa11.35□□□□□ -0.59
USP4-203ENST00000415188 VGLL1Q99990 258 aa11.35□□□□□ -0.59
USP4-203ENST00000415188 HSPB8Q9UJY1 196 aa11.35□□□□□ -0.59
USP4-203ENST00000415188 MGAM2Q2M2H8 2515 aa11.34□□□□□ -0.59
USP4-203ENST00000415188 FABP5P3A8MUU1 101 aa11.34□□□□□ -0.59
USP4-203ENST00000415188 IGLC6P0CF74 106 aa11.34□□□□□ -0.59
USP4-203ENST00000415188 IGLC3P0DOY3 106 aa11.34□□□□□ -0.59
USP4-203ENST00000415188 PET117Q6UWS5 81 aa11.34□□□□□ -0.59
USP4-203ENST00000415188 FER1L6-AS1Q8NA97 138 aa11.34□□□□□ -0.59
USP4-203ENST00000415188 ASCL2Q99929 193 aa11.34□□□□□ -0.59
USP4-203ENST00000415188 PPP1R14DQ9NXH3 145 aa11.34□□□□□ -0.59
USP4-203ENST00000415188 LINC01548A6NM66 108 aa11.33□□□□□ -0.6
USP4-203ENST00000415188 HIST1H1AQ02539 215 aaPredicted RBP11.33□□□□□ -0.6
USP4-203ENST00000415188 LINC01559Q495D7 138 aa11.33□□□□□ -0.6
USP4-203ENST00000415188 FAM104BQ5XKR9 115 aa11.33□□□□□ -0.6
USP4-203ENST00000415188 SHISA2Q6UWI4 295 aa11.33□□□□□ -0.6
USP4-203ENST00000415188 USMG5Q96IX5 58 aa11.33□□□□□ -0.6
USP4-203ENST00000415188 CNFNQ9BYD5 112 aa11.33□□□□□ -0.6
USP4-203ENST00000415188 A6NDX4 124 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 SYS1-DBNDD2H3BUS1 97 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 FA2HQ7L5A8 372 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 TMEM219Q86XT9 240 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 TPPP3Q9BW30 176 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 TMEM191AQ9H0A3 160 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 AP5S1Q9NUS5 200 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 ZNF580Q9UK33 172 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 IGHV3-35A0A0C4DH35 117 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 IGHG2P01859 326 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 TRGV3P03979 118 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 HLA-DMBP28068 263 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 Q6YL49 198 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 ORMDL3Q8N138 153 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 Q8TAT8 98 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 MAP1LC3CQ9BXW4 147 aa11.32□□□□□ -0.6
USP4-203ENST00000415188 TMSB15BA0A087X1C1 80 aa11.31□□□□□ -0.6
USP4-203ENST00000415188 M0QZ24 198 aa11.31□□□□□ -0.6
USP4-203ENST00000415188 NDUFA4O00483 81 aa11.31□□□□□ -0.6
USP4-203ENST00000415188 RPLP1P05386 114 aaKnown RBP11.31□□□□□ -0.6
USP4-203ENST00000415188 ZNF80P51504 273 aaPredicted RBP11.31□□□□□ -0.6
USP4-203ENST00000415188 OR10AG1Q8NH19 301 aa11.31□□□□□ -0.6
USP4-203ENST00000415188 LENEPQ9Y5L5 61 aa11.31□□□□□ -0.6
USP4-203ENST00000415188 PKD1L1Q8TDX9 2849 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 IGHV3OR16-8A0A075B7F1 116 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 TRAV8-2A0A0B4J237 113 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 ARL3P36405 182 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 HNRNPA3P51991 378 aaKnown RBP11.3□□□□□ -0.6
USP4-203ENST00000415188 ZNF138P52744 262 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 PRR31Q5SQ13 230 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 TMEM78Q5T7P6 136 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 C9orf47Q6ZRZ4 202 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 C8orf86Q6ZUL3 223 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 PRSS3P2Q8NHM4 247 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 GLMPQ8WWB7 406 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 PRELID3AQ96N28 172 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 ST20Q9HBF5 79 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 LAMTOR2Q9Y2Q5 125 aa11.3□□□□□ -0.6
USP4-203ENST00000415188 MRPS16Q9Y3D3 137 aaKnown RBP11.3□□□□□ -0.6
USP4-203ENST00000415188 TMEM213A2RRL7 107 aa11.29□□□□□ -0.6
USP4-203ENST00000415188 OR4C46A6NHA9 309 aa11.29□□□□□ -0.6
USP4-203ENST00000415188 WIPF1O43516 503 aa11.29□□□□□ -0.6
USP4-203ENST00000415188 PPBPP02775 128 aa11.29□□□□□ -0.6
USP4-203ENST00000415188 IGFL4Q6B9Z1 124 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 130.5 ms