RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 STARD9Q9P2P6 4700 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 F6UB75 175 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 PAGE4O60829 102 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 CRIP1P50238 77 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 FGF8P55075 233 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-202ENST00000394943 RANP62826 216 aaKnown RBP5.04□□□□□ -1.6
LIMA1-202ENST00000394943 SLC7A5P1Q8MH63 180 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 CSMD3Q7Z407 3707 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 C11orf94C9JXX5 98 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 H7BYZ3 331 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 FLI1Q01543 452 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-202ENST00000394943 IGFL4Q6B9Z1 124 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 WDR73Q6P4I2 378 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 BLNKQ8WV28 456 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 C9orf85Q96MD7 179 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 SSBP4Q9BWG4 385 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-202ENST00000394943 IGHV4-4A0A075B6R2 117 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 IGKV2-40A0A087WW87 121 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-202ENST00000394943 GCGP01275 180 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 IGKV2D-40P01614 121 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-202ENST00000394943 FOXA3P55318 350 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-202ENST00000394943 SUMO1P63165 101 aaKnown RBP5.03□□□□□ -1.6
LIMA1-202ENST00000394943 RCHY1Q96PM5 261 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 SLC35B3Q9H1N7 401 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 K7EQM0 130 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 CIDEAO60543 219 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 ERCC8Q13216 396 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 CT83Q5H943 113 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 TMEM78Q5T7P6 136 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 POM121L12Q8N7R1 296 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 ASCL2Q99929 193 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 CNFNQ9BYD5 112 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 NBEAL1Q6ZS30 2694 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 PGPEP1LA6NFU8 196 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 SNAI2O43623 268 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 PFN1P07737 140 aaKnown RBP5.03□□□□□ -1.6
LIMA1-202ENST00000394943 LGALS9BQ3B8N2 356 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 TMEM263Q8WUH6 116 aaKnown RBP5.03□□□□□ -1.6
LIMA1-202ENST00000394943 C16orf74Q96GX8 76 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 LINC00052Q96N35 136 aa5.03□□□□□ -1.6
LIMA1-202ENST00000394943 TRBV20OR9-2A0A075B6H5 130 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 LYRM9A8MSI8 78 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 KRBOX1C9JBD0 128 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 SPINK4O60575 86 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 TFPI2P48307 235 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 RPL11P62913 178 aaKnown RBP5.02□□□□□ -1.61
LIMA1-202ENST00000394943 UFSP1Q6NVU6 142 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 TUBA4BQ9H853 241 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 SCO2A0A1W2PP80 73 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 CA1P00915 261 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-202ENST00000394943 ZNF80P51504 273 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-202ENST00000394943 DEFB1P60022 68 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 GNG5P63218 68 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 GOLT1AQ6ZVE7 132 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 GOLT1BQ9Y3E0 138 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 HMGB3O15347 200 aaKnown RBP5.02□□□□□ -1.61
LIMA1-202ENST00000394943 TCL1AP56279 114 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 GATD1Q8NB37 220 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 CMTM2Q8TAZ6 248 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 FAM210BQ96KR6 192 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 BIN3Q9NQY0 253 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 U3KQK5 164 aa5.02□□□□□ -1.61
LIMA1-202ENST00000394943 TRAV21A0A0B4J279 112 aa5.01□□□□□ -1.61
LIMA1-202ENST00000394943 H3BNG1 76 aa5.01□□□□□ -1.61
LIMA1-202ENST00000394943 H3BTX0 84 aa5.01□□□□□ -1.61
LIMA1-202ENST00000394943 ZC2HC1AQ96GY0 325 aa5.01□□□□□ -1.61
LIMA1-202ENST00000394943 C11orf21Q9P2W6 132 aa5.01□□□□□ -1.61
LIMA1-202ENST00000394943 PLECQ15149 4684 aaKnown RBP5.01□□□□□ -1.61
LIMA1-202ENST00000394943 OR4B1Q8NGF8 309 aa5.01□□□□□ -1.61
LIMA1-202ENST00000394943 ZMAT4Q9H898 229 aa5.01□□□□□ -1.61
LIMA1-202ENST00000394943 IGHV3-16A0A0C4DH30 117 aa5.01□□□□□ -1.61
LIMA1-202ENST00000394943 FAM231BA6NCW3 169 aa5.01□□□□□ -1.61
LIMA1-202ENST00000394943 C9JQL5 133 aa5.01□□□□□ -1.61
LIMA1-202ENST00000394943 RPL35P42766 123 aaKnown RBP5.01□□□□□ -1.61
LIMA1-202ENST00000394943 RARRES2Q99969 163 aa5.01□□□□□ -1.61
LIMA1-202ENST00000394943 SPXQ9BT56 116 aa5.01□□□□□ -1.61
LIMA1-202ENST00000394943 GNG13Q9P2W3 67 aa5.01□□□□□ -1.61
LIMA1-202ENST00000394943 IGHV1OR15-1A0A075B7D0 117 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 TCTAP57738 103 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 SMUG1Q53HV7 270 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 RASL10AQ92737 203 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 IGKV3D-20A0A0C4DH25 116 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 EIF3GO75821 320 aaKnown RBP eCLIP5□□□□□ -1.61
LIMA1-202ENST00000394943 IGLC6P0CF74 106 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 KCNS1Q96KK3 526 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 GFRA4Q9GZZ7 299 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 SELENOKQ9Y6D0 94 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 IGHV4-28A0A0C4DH34 117 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 PRB2P02812 416 aaPredicted RBP5□□□□□ -1.61
LIMA1-202ENST00000394943 AKR1C3P42330 323 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 BTN1A1Q13410 526 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 PEA15Q15121 130 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 SPINK13Q1W4C9 94 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 C8orf49Q96NF6 230 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 DKK2Q9UBU2 259 aa5□□□□□ -1.61
LIMA1-202ENST00000394943 IGKV3-7A0A075B6H7 116 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 TRGV11A0A075B6L2 103 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 FABP5P3A8MUU1 101 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 K7EN84 100 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 OR5AL1P0C617 328 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms