RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TMEM160Q9NX00 188 aa12.63□□□□□ -0.39
SDC4-201ENST00000372733 SMIM17P0DL12 118 aa12.63□□□□□ -0.39
SDC4-201ENST00000372733 MRPL35Q9NZE8 188 aaKnown RBP12.63□□□□□ -0.39
SDC4-201ENST00000372733 CACNA1BQ00975 2339 aa12.63□□□□□ -0.39
SDC4-201ENST00000372733 IGHV3-49A0A0A0MS15 119 aa12.62□□□□□ -0.39
SDC4-201ENST00000372733 TRAV40A0A0B4J280 105 aa12.62□□□□□ -0.39
SDC4-201ENST00000372733 ECSCRQ19T08 205 aa12.62□□□□□ -0.39
SDC4-201ENST00000372733 C15orf32Q32M92 178 aa12.62□□□□□ -0.39
SDC4-201ENST00000372733 Q6ZQT7 251 aa12.62□□□□□ -0.39
SDC4-201ENST00000372733 PHLDA1Q8WV24 401 aaPredicted RBP12.62□□□□□ -0.39
SDC4-201ENST00000372733 ZFAND3Q9H8U3 227 aa12.62□□□□□ -0.39
SDC4-201ENST00000372733 UFC1Q9Y3C8 167 aa12.62□□□□□ -0.39
SDC4-201ENST00000372733 TMEM238C9JI98 176 aa12.61□□□□□ -0.39
SDC4-201ENST00000372733 BUB3O43684 328 aa12.61□□□□□ -0.39
SDC4-201ENST00000372733 ATP5LO75964 103 aa12.61□□□□□ -0.39
SDC4-201ENST00000372733 RPL24P83731 157 aaKnown RBP12.61□□□□□ -0.39
SDC4-201ENST00000372733 TIMD4Q96H15 378 aa12.61□□□□□ -0.39
SDC4-201ENST00000372733 AGPAT4-IT1Q9H0P7 198 aa12.61□□□□□ -0.39
SDC4-201ENST00000372733 SVEP1Q4LDE5 3571 aa12.61□□□□□ -0.39
SDC4-201ENST00000372733 CCDC144NLQ6NUI1 221 aa12.61□□□□□ -0.39
SDC4-201ENST00000372733 VKORC1Q9BQB6 163 aa12.61□□□□□ -0.39
SDC4-201ENST00000372733 TEX48A0A1B0GUV7 120 aa12.6□□□□□ -0.39
SDC4-201ENST00000372733 MAPKAPK5-AS1Q8N8E1 139 aa12.6□□□□□ -0.39
SDC4-201ENST00000372733 NRACQ8N912 160 aa12.6□□□□□ -0.39
SDC4-201ENST00000372733 ZNF502Q8TBZ5 544 aa12.6□□□□□ -0.39
SDC4-201ENST00000372733 ZNF207O43670 478 aaKnown RBP12.6□□□□□ -0.39
SDC4-201ENST00000372733 CLEC3BP05452 202 aa12.6□□□□□ -0.39
SDC4-201ENST00000372733 CEND1Q8N111 149 aa12.6□□□□□ -0.39
SDC4-201ENST00000372733 Q8N9W7 124 aa12.6□□□□□ -0.39
SDC4-201ENST00000372733 HRNRQ86YZ3 2850 aaPredicted RBP12.6□□□□□ -0.39
SDC4-201ENST00000372733 IGHV7-4-1A0A0J9YVY3 117 aa12.59□□□□□ -0.39
SDC4-201ENST00000372733 EFNA4P52798 201 aa12.59□□□□□ -0.39
SDC4-201ENST00000372733 PSMG4Q5JS54 123 aa12.59□□□□□ -0.39
SDC4-201ENST00000372733 MED13LQ71F56 2210 aa12.59□□□□□ -0.39
SDC4-201ENST00000372733 CLPSL1A2RUU4 121 aa12.59□□□□□ -0.39
SDC4-201ENST00000372733 SMPXQ9UHP9 88 aa12.59□□□□□ -0.39
SDC4-201ENST00000372733 TM2D2Q9BX73 214 aa12.58□□□□□ -0.39
SDC4-201ENST00000372733 ASH1LQ9NR48 2969 aaKnown RBP12.58□□□□□ -0.4
SDC4-201ENST00000372733 TRAV8-2A0A0B4J237 113 aa12.58□□□□□ -0.4
SDC4-201ENST00000372733 RBAKDNA6NC62 111 aa12.58□□□□□ -0.4
SDC4-201ENST00000372733 LAGE3Q14657 143 aa12.58□□□□□ -0.4
SDC4-201ENST00000372733 MSRB2Q9Y3D2 182 aa12.58□□□□□ -0.4
SDC4-201ENST00000372733 ATP6V0E1O15342 81 aa12.58□□□□□ -0.4
SDC4-201ENST00000372733 EBI3Q14213 229 aa12.58□□□□□ -0.4
SDC4-201ENST00000372733 CLEC19AQ6UXS0 136 aa12.58□□□□□ -0.4
SDC4-201ENST00000372733 FAM110DQ8TAY7 271 aaPredicted RBP12.58□□□□□ -0.4
SDC4-201ENST00000372733 CCDC140Q96MF4 163 aa12.58□□□□□ -0.4
SDC4-201ENST00000372733 SLC50A1Q9BRV3 221 aa12.58□□□□□ -0.4
SDC4-201ENST00000372733 SPTA1P02549 2419 aa12.57□□□□□ -0.4
SDC4-201ENST00000372733 CDSNQ15517 529 aa12.57□□□□□ -0.4
SDC4-201ENST00000372733 TMEM78Q5T7P6 136 aa12.57□□□□□ -0.4
SDC4-201ENST00000372733 MYOZ3Q8TDC0 251 aa12.57□□□□□ -0.4
SDC4-201ENST00000372733 TCF15Q12870 199 aa12.57□□□□□ -0.4
SDC4-201ENST00000372733 A0A087WX48 190 aa12.56□□□□□ -0.4
SDC4-201ENST00000372733 G3V318 75 aa12.56□□□□□ -0.4
SDC4-201ENST00000372733 H3BVH4 76 aa12.56□□□□□ -0.4
SDC4-201ENST00000372733 GOSR1O95249 250 aa12.56□□□□□ -0.4
SDC4-201ENST00000372733 HLA-DRB4P13762 266 aa12.56□□□□□ -0.4
SDC4-201ENST00000372733 ZFP36P26651 326 aaKnown RBP12.56□□□□□ -0.4
SDC4-201ENST00000372733 SPANXN1Q5VSR9 72 aa12.56□□□□□ -0.4
SDC4-201ENST00000372733 C8orf86Q6ZUL3 223 aa12.56□□□□□ -0.4
SDC4-201ENST00000372733 HLA-DRB4X5D2U9 266 aa12.56□□□□□ -0.4
SDC4-201ENST00000372733 OOSP1A8MZH6 123 aa12.55□□□□□ -0.4
SDC4-201ENST00000372733 IGLL5B9A064 214 aa12.55□□□□□ -0.4
SDC4-201ENST00000372733 E9PLD3 99 aa12.55□□□□□ -0.4
SDC4-201ENST00000372733 SPRY2O43597 315 aa12.55□□□□□ -0.4
SDC4-201ENST00000372733 RAB9AP51151 201 aa12.55□□□□□ -0.4
SDC4-201ENST00000372733 NBASA2RRP1 2371 aa12.54□□□□□ -0.4
SDC4-201ENST00000372733 LINC01548A6NM66 108 aa12.54□□□□□ -0.4
SDC4-201ENST00000372733 PRR9Q5T870 116 aa12.54□□□□□ -0.4
SDC4-201ENST00000372733 MINOS1Q5TGZ0 78 aa12.54□□□□□ -0.4
SDC4-201ENST00000372733 ZNF479Q96JC4 524 aa12.54□□□□□ -0.4
SDC4-201ENST00000372733 KLK15Q9H2R5 256 aa12.54□□□□□ -0.4
SDC4-201ENST00000372733 MINOS1-NBL1R4GNA1 71 aa12.54□□□□□ -0.4
SDC4-201ENST00000372733 J3KRW8 73 aa12.54□□□□□ -0.4
SDC4-201ENST00000372733 AGRNO00468 2067 aa12.53□□□□□ -0.4
SDC4-201ENST00000372733 WFDC2Q14508 124 aa12.53□□□□□ -0.4
SDC4-201ENST00000372733 SRSF1Q07955 248 aaKnown RBP eCLIP12.53□□□□□ -0.4
SDC4-201ENST00000372733 C12orf74Q32Q52 190 aa12.53□□□□□ -0.4
SDC4-201ENST00000372733 HIST1H4GQ99525 98 aa12.53□□□□□ -0.4
SDC4-201ENST00000372733 PRSS47A8MTI9 375 aa12.52□□□□□ -0.4
SDC4-201ENST00000372733 IGF1P05019 195 aa12.52□□□□□ -0.4
SDC4-201ENST00000372733 MTURNQ8N3F0 131 aa12.52□□□□□ -0.4
SDC4-201ENST00000372733 SMIM2Q9BVW6 85 aa12.52□□□□□ -0.4
SDC4-201ENST00000372733 CCL21O00585 134 aa12.52□□□□□ -0.41
SDC4-201ENST00000372733 PLNP26678 52 aa12.52□□□□□ -0.41
SDC4-201ENST00000372733 C11orf71Q6IPW1 123 aa12.52□□□□□ -0.41
SDC4-201ENST00000372733 AMTNQ6UX39 209 aa12.52□□□□□ -0.41
SDC4-201ENST00000372733 METTL26Q96S19 204 aa12.52□□□□□ -0.41
SDC4-201ENST00000372733 H3BMG7 143 aa12.51□□□□□ -0.41
SDC4-201ENST00000372733 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.51□□□□□ -0.41
SDC4-201ENST00000372733 FBXL19-AS1Q494R0 122 aa12.51□□□□□ -0.41
SDC4-201ENST00000372733 FOXI2Q6ZQN5 318 aa12.51□□□□□ -0.41
SDC4-201ENST00000372733 C9orf47Q6ZRZ4 202 aa12.51□□□□□ -0.41
SDC4-201ENST00000372733 C1orf122Q6ZSJ8 110 aa12.51□□□□□ -0.41
SDC4-201ENST00000372733 SIRPDQ9H106 197 aa12.51□□□□□ -0.41
SDC4-201ENST00000372733 SPANXB1Q9NS25 103 aaPredicted RBP12.51□□□□□ -0.41
SDC4-201ENST00000372733 PTPRQQ9UMZ3 2332 aa12.5□□□□□ -0.41
SDC4-201ENST00000372733 IGHV4-4A0A075B6R2 117 aa12.5□□□□□ -0.41
SDC4-201ENST00000372733 F8VRH5 84 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms