RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 WFDC2Q14508 124 aa17.31■□□□□ 0.36
TRIM28-202ENST00000341753 C5orf64Q2M2E5 130 aa17.31■□□□□ 0.36
TRIM28-202ENST00000341753 SAMD13Q5VXD3 122 aa17.31■□□□□ 0.36
TRIM28-202ENST00000341753 COX8CQ7Z4L0 72 aa17.31■□□□□ 0.36
TRIM28-202ENST00000341753 DPM3Q9P2X0 92 aa17.31■□□□□ 0.36
TRIM28-202ENST00000341753 FABP5P3A8MUU1 101 aa17.31■□□□□ 0.36
TRIM28-202ENST00000341753 ZNF672Q499Z4 452 aaPredicted RBP17.31■□□□□ 0.36
TRIM28-202ENST00000341753 S100A7AQ86SG5 101 aa17.31■□□□□ 0.36
TRIM28-202ENST00000341753 CEND1Q8N111 149 aa17.31■□□□□ 0.36
TRIM28-202ENST00000341753 TMEM190Q8WZ59 177 aa17.31■□□□□ 0.36
TRIM28-202ENST00000341753 NXT2Q9NPJ8 142 aaKnown RBP17.31■□□□□ 0.36
TRIM28-202ENST00000341753 ARPC1AQ92747 370 aa17.3■□□□□ 0.36
TRIM28-202ENST00000341753 HIGD1BQ9P298 99 aa17.3■□□□□ 0.36
TRIM28-202ENST00000341753 SMIM17P0DL12 118 aa17.3■□□□□ 0.36
TRIM28-202ENST00000341753 PSMG3-AS1Q96PY0 264 aa17.3■□□□□ 0.36
TRIM28-202ENST00000341753 CTSGP08311 255 aa17.29■□□□□ 0.36
TRIM28-202ENST00000341753 AMTNQ6UX39 209 aa17.29■□□□□ 0.36
TRIM28-202ENST00000341753 Q6ZQT7 251 aa17.29■□□□□ 0.36
TRIM28-202ENST00000341753 SMAGPQ0VAQ4 97 aa17.29■□□□□ 0.36
TRIM28-202ENST00000341753 C11orf21Q9P2W6 132 aa17.28■□□□□ 0.36
TRIM28-202ENST00000341753 UFC1Q9Y3C8 167 aa17.28■□□□□ 0.36
TRIM28-202ENST00000341753 AZU1P20160 251 aa17.28■□□□□ 0.36
TRIM28-202ENST00000341753 EFNA4P52798 201 aa17.28■□□□□ 0.36
TRIM28-202ENST00000341753 PIFOQ8TCI5 191 aa17.28■□□□□ 0.36
TRIM28-202ENST00000341753 AGRNO00468 2067 aa17.28■□□□□ 0.36
TRIM28-202ENST00000341753 H3BMG7 143 aa17.27■□□□□ 0.36
TRIM28-202ENST00000341753 NDUFA3O95167 84 aa17.27■□□□□ 0.36
TRIM28-202ENST00000341753 SH2D6Q7Z4S9 175 aa17.27■□□□□ 0.36
TRIM28-202ENST00000341753 ADORA2A-AS1P86434 159 aa17.27■□□□□ 0.36
TRIM28-202ENST00000341753 TSSC4Q9Y5U2 329 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-202ENST00000341753 IGHV3-49A0A0A0MS15 119 aa17.27■□□□□ 0.35
TRIM28-202ENST00000341753 IGKV3D-20A0A0C4DH25 116 aa17.27■□□□□ 0.35
TRIM28-202ENST00000341753 LCNL1Q6ZST4 164 aa17.27■□□□□ 0.35
TRIM28-202ENST00000341753 NPBQ8NG41 125 aa17.27■□□□□ 0.35
TRIM28-202ENST00000341753 LINC01546A6NGU7 62 aa17.26■□□□□ 0.35
TRIM28-202ENST00000341753 IGLL5B9A064 214 aa17.26■□□□□ 0.35
TRIM28-202ENST00000341753 TMEM11P17152 192 aa17.26■□□□□ 0.35
TRIM28-202ENST00000341753 Q8N8P6 123 aa17.26■□□□□ 0.35
TRIM28-202ENST00000341753 CNFNQ9BYD5 112 aa17.26■□□□□ 0.35
TRIM28-202ENST00000341753 MSRB2Q9Y3D2 182 aa17.26■□□□□ 0.35
TRIM28-202ENST00000341753 IGLV2-18A0A075B6J9 118 aa17.25■□□□□ 0.35
TRIM28-202ENST00000341753 ZNF479Q96JC4 524 aa17.25■□□□□ 0.35
TRIM28-202ENST00000341753 TM2D2Q9BX73 214 aa17.25■□□□□ 0.35
TRIM28-202ENST00000341753 ZFHX3Q15911 3703 aa17.25■□□□□ 0.35
TRIM28-202ENST00000341753 ATP5LO75964 103 aa17.24■□□□□ 0.35
TRIM28-202ENST00000341753 E9PLD3 99 aa17.24■□□□□ 0.35
TRIM28-202ENST00000341753 KLK15Q9H2R5 256 aa17.24■□□□□ 0.35
TRIM28-202ENST00000341753 SPRY2O43597 315 aa17.23■□□□□ 0.35
TRIM28-202ENST00000341753 ETDBQ3ZM63 59 aa17.23■□□□□ 0.35
TRIM28-202ENST00000341753 LINC01559Q495D7 138 aa17.23■□□□□ 0.35
TRIM28-202ENST00000341753 CEACAM3P40198 252 aa17.23■□□□□ 0.35
TRIM28-202ENST00000341753 C12orf74Q32Q52 190 aa17.23■□□□□ 0.35
TRIM28-202ENST00000341753 TTC9CQ8N5M4 171 aa17.23■□□□□ 0.35
TRIM28-202ENST00000341753 MYOZ3Q8TDC0 251 aa17.23■□□□□ 0.35
TRIM28-202ENST00000341753 HIST1H4GQ99525 98 aa17.23■□□□□ 0.35
TRIM28-202ENST00000341753 SPANXB1Q9NS25 103 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-202ENST00000341753 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP17.22■□□□□ 0.35
TRIM28-202ENST00000341753 CLEC2AQ6UVW9 174 aa17.22■□□□□ 0.35
TRIM28-202ENST00000341753 HIVEP3Q5T1R4 2406 aa17.22■□□□□ 0.35
TRIM28-202ENST00000341753 SPTAN1Q13813 2472 aaKnown RBP17.22■□□□□ 0.35
TRIM28-202ENST00000341753 FOXI2Q6ZQN5 318 aa17.22■□□□□ 0.35
TRIM28-202ENST00000341753 ZNF48Q96MX3 618 aaPredicted RBP17.22■□□□□ 0.35
TRIM28-202ENST00000341753 VPS13CQ709C8 3753 aa17.22■□□□□ 0.35
TRIM28-202ENST00000341753 LAGE3Q14657 143 aa17.21■□□□□ 0.35
TRIM28-202ENST00000341753 AGPAT4-IT1Q9H0P7 198 aa17.21■□□□□ 0.35
TRIM28-202ENST00000341753 NRACQ8N912 160 aa17.2■□□□□ 0.34
TRIM28-202ENST00000341753 OR11H6Q8NGC7 330 aa17.2■□□□□ 0.34
TRIM28-202ENST00000341753 SIGMAR1Q99720 223 aa17.2■□□□□ 0.34
TRIM28-202ENST00000341753 SMPXQ9UHP9 88 aa17.2■□□□□ 0.34
TRIM28-202ENST00000341753 J3KRW8 73 aa17.2■□□□□ 0.34
TRIM28-202ENST00000341753 LY6G5BQ8NDX9 201 aa17.2■□□□□ 0.34
TRIM28-202ENST00000341753 GAGE12HA6NDE8 117 aa17.19■□□□□ 0.34
TRIM28-202ENST00000341753 INSL3P51460 131 aa17.19■□□□□ 0.34
TRIM28-202ENST00000341753 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa17.19■□□□□ 0.34
TRIM28-202ENST00000341753 SRSF2Q01130 221 aaKnown RBP17.19■□□□□ 0.34
TRIM28-202ENST00000341753 ITPR1Q14643 2758 aa17.18■□□□□ 0.34
TRIM28-202ENST00000341753 ECSCRQ19T08 205 aa17.18■□□□□ 0.34
TRIM28-202ENST00000341753 C15orf32Q32M92 178 aa17.18■□□□□ 0.34
TRIM28-202ENST00000341753 A0A087WX48 190 aa17.18■□□□□ 0.34
TRIM28-202ENST00000341753 CLEC3BP05452 202 aa17.18■□□□□ 0.34
TRIM28-202ENST00000341753 SPAG8Q99932 426 aaPredicted RBP17.18■□□□□ 0.34
TRIM28-202ENST00000341753 CELSR1Q9NYQ6 3014 aa17.18■□□□□ 0.34
TRIM28-202ENST00000341753 KLRB1Q12918 225 aa17.17■□□□□ 0.34
TRIM28-202ENST00000341753 SPANXN1Q5VSR9 72 aa17.17■□□□□ 0.34
TRIM28-202ENST00000341753 IGHV7-4-1A0A0J9YVY3 117 aa17.17■□□□□ 0.34
TRIM28-202ENST00000341753 CIDEAO60543 219 aa17.17■□□□□ 0.34
TRIM28-202ENST00000341753 FBXL19-AS1Q494R0 122 aa17.17■□□□□ 0.34
TRIM28-202ENST00000341753 IGHV7-81A0A0B4J1V7 117 aa17.16■□□□□ 0.34
TRIM28-202ENST00000341753 A0A1W2PPR1 153 aa17.16■□□□□ 0.34
TRIM28-202ENST00000341753 F8W1H4 67 aa17.16■□□□□ 0.34
TRIM28-202ENST00000341753 BUB3O43684 328 aa17.16■□□□□ 0.34
TRIM28-202ENST00000341753 LY6DQ14210 128 aa17.16■□□□□ 0.34
TRIM28-202ENST00000341753 CD300EQ496F6 205 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-202ENST00000341753 PSMG4Q5JS54 123 aa17.16■□□□□ 0.34
TRIM28-202ENST00000341753 H3BVH4 76 aa17.15■□□□□ 0.34
TRIM28-202ENST00000341753 ODF3BA8MYP8 253 aa17.15■□□□□ 0.34
TRIM28-202ENST00000341753 SFTA2Q6UW10 78 aa17.15■□□□□ 0.34
TRIM28-202ENST00000341753 CYSLTR1Q9Y271 337 aa17.15■□□□□ 0.34
TRIM28-202ENST00000341753 ZFAND3Q9H8U3 227 aa17.14■□□□□ 0.33
TRIM28-202ENST00000341753 SRSF1Q07955 248 aaKnown RBP eCLIP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms