RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 KLF5Q13887 457 aaPredicted RBP10.08□□□□□ -0.8
USP38-201ENST00000307017 V9GYV3 84 aa10.08□□□□□ -0.8
USP38-201ENST00000307017 SBF1O95248 1867 aa10.08□□□□□ -0.8
USP38-201ENST00000307017 FRMPD3Q5JV73 1810 aa10.08□□□□□ -0.8
USP38-201ENST00000307017 TRBV25-1A0A075B6N4 114 aa10.08□□□□□ -0.8
USP38-201ENST00000307017 K7EP34 96 aa10.08□□□□□ -0.8
USP38-201ENST00000307017 CFHR4Q92496 578 aa10.08□□□□□ -0.8
USP38-201ENST00000307017 DEFB4AO15263 64 aa10.08□□□□□ -0.8
USP38-201ENST00000307017 DNAJC30Q96LL9 226 aa10.08□□□□□ -0.8
USP38-201ENST00000307017 IGHV2-70P01814 119 aa10.08□□□□□ -0.8
USP38-201ENST00000307017 SHANK2-AS3Q9BTD1 123 aa10.08□□□□□ -0.8
USP38-201ENST00000307017 TTTY13Q9BZ97 58 aa10.08□□□□□ -0.8
USP38-201ENST00000307017 EML6Q6ZMW3 1958 aa10.08□□□□□ -0.8
USP38-201ENST00000307017 RNF183Q96D59 192 aa10.07□□□□□ -0.8
USP38-201ENST00000307017 RITA1Q96K30 269 aa10.07□□□□□ -0.8
USP38-201ENST00000307017 NDUFA12Q9UI09 145 aa10.07□□□□□ -0.8
USP38-201ENST00000307017 UBE2E1P51965 193 aa10.07□□□□□ -0.8
USP38-201ENST00000307017 C5orf38Q86SI9 138 aa10.07□□□□□ -0.8
USP38-201ENST00000307017 NUPR1O60356 82 aa10.07□□□□□ -0.8
USP38-201ENST00000307017 NBL1P41271 181 aa10.07□□□□□ -0.8
USP38-201ENST00000307017 MRPL27Q9P0M9 148 aaKnown RBP10.07□□□□□ -0.8
USP38-201ENST00000307017 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.07□□□□□ -0.82e-18■■■■■ 68.3
USP38-201ENST00000307017 FAM104BQ5XKR9 115 aa10.07□□□□□ -0.8
USP38-201ENST00000307017 NCOR1O75376 2440 aa10.06□□□□□ -0.8
USP38-201ENST00000307017 IGKV2D-24A0A075B6R9 120 aa10.06□□□□□ -0.8
USP38-201ENST00000307017 SMIM2Q9BVW6 85 aa10.06□□□□□ -0.8
USP38-201ENST00000307017 NDUFS7O75251 213 aa10.06□□□□□ -0.8
USP38-201ENST00000307017 SEC61GP60059 68 aa10.06□□□□□ -0.8
USP38-201ENST00000307017 DSCAML1Q8TD84 2053 aa10.06□□□□□ -0.8
USP38-201ENST00000307017 ZNF134P52741 427 aa10.06□□□□□ -0.8
USP38-201ENST00000307017 PRR4Q16378 134 aa10.06□□□□□ -0.8
USP38-201ENST00000307017 DAZ1Q9NQZ3 744 aaKnown RBP10.06□□□□□ -0.8
USP38-201ENST00000307017 C9orf139Q6ZV77 190 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 C14orf132Q9NPU4 83 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 DOPEY2Q9Y3R5 2298 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 IGHV3-30P01768 117 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 IGHV3-33P01772 117 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 PFN1P07737 140 aaKnown RBP10.05□□□□□ -0.8
USP38-201ENST00000307017 IGHV3-30-3P0DP02 117 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 IGHV3-30-5P0DP03 117 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 C8orf31Q8N9H6 132 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 Q8N8P6 123 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 SPTBN1Q01082 2364 aaKnown RBP10.05□□□□□ -0.8
USP38-201ENST00000307017 A0A1B0GW64 132 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 ZFP36L1Q07352 338 aaKnown RBP10.05□□□□□ -0.8
USP38-201ENST00000307017 ANKRD29Q8N6D5 301 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 ZSWIM8A7E2V4 1837 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 C12orf74Q32Q52 190 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 WFDC9Q8NEX5 89 aa10.05□□□□□ -0.8
USP38-201ENST00000307017 RBAKDNA6NC62 111 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 PROP1O75360 226 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 C1QTNF4Q9BXJ3 329 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 TRAV1-1A0A0B4J248 108 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 SMIM20Q8N5G0 67 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 SMIM27A0A1W2PRY6 76 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 PRSS46E5RG02 174 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 B3GALT5-AS1P59052 145 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 MRPS18CQ9Y3D5 142 aaKnown RBP10.04□□□□□ -0.8
USP38-201ENST00000307017 COX8AP10176 69 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 C17orf58Q2M2W7 97 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 UBL5Q9BZL1 73 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 IGHV4OR15-8A0A075B7B6 117 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 A0A087WW49 117 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 ADAMTS7Q9UKP4 1686 aa10.04□□□□□ -0.8
USP38-201ENST00000307017 IGHV1OR15-1A0A075B7D0 117 aa10.03□□□□□ -0.8
USP38-201ENST00000307017 TNRC6AQ8NDV7 1962 aaKnown RBP10.03□□□□□ -0.8
USP38-201ENST00000307017 IGLV3-12A0A075B6K2 115 aa10.03□□□□□ -0.8
USP38-201ENST00000307017 DYNAPQ8N1N2 210 aa10.03□□□□□ -0.8
USP38-201ENST00000307017 NPBQ8NG41 125 aa10.03□□□□□ -0.8
USP38-201ENST00000307017 OR11H6Q8NGC7 330 aa10.03□□□□□ -0.8
USP38-201ENST00000307017 LINC01619G3V211 115 aa10.03□□□□□ -0.8
USP38-201ENST00000307017 PPDPFLQ8WWR9 84 aa10.03□□□□□ -0.8
USP38-201ENST00000307017 NRGNQ92686 78 aa10.03□□□□□ -0.8
USP38-201ENST00000307017 FAM223BA6NKX1 122 aa10.03□□□□□ -0.8
USP38-201ENST00000307017 BAALC-AS2P0C853 105 aa10.03□□□□□ -0.8
USP38-201ENST00000307017 FAM223AQ8IWN6 122 aa10.03□□□□□ -0.8
USP38-201ENST00000307017 PRO1854Q9UHT4 67 aa10.03□□□□□ -0.8
USP38-201ENST00000307017 TMEM243Q9BU79 118 aa10.03□□□□□ -0.8
USP38-201ENST00000307017 Q6ZR03 302 aa10.02□□□□□ -0.81
USP38-201ENST00000307017 TRBV19A0A075B6N1 114 aa10.02□□□□□ -0.81
USP38-201ENST00000307017 PLA2G1BP04054 148 aaKnown RBP10.02□□□□□ -0.81
USP38-201ENST00000307017 Q9H8V8 135 aa10.02□□□□□ -0.81
USP38-201ENST00000307017 TP73-AS1Q9UF72 201 aa10.02□□□□□ -0.81
USP38-201ENST00000307017 CLEC2BQ92478 149 aa10.01□□□□□ -0.81
USP38-201ENST00000307017 COX7B2Q8TF08 81 aa10.01□□□□□ -0.81
USP38-201ENST00000307017 KIF26AQ9ULI4 1882 aaPredicted RBP10.01□□□□□ -0.81
USP38-201ENST00000307017 TMEM14BQ9NUH8 114 aa10.01□□□□□ -0.81
USP38-201ENST00000307017 B4DSR2 109 aa10.01□□□□□ -0.81
USP38-201ENST00000307017 GRNP28799 593 aaKnown RBP10.01□□□□□ -0.81
USP38-201ENST00000307017 WDR90Q96KV7 1748 aa10.01□□□□□ -0.81
USP38-201ENST00000307017 EGR2P11161 476 aaPredicted RBP10.01□□□□□ -0.81
USP38-201ENST00000307017 IFI6P09912 130 aa10.01□□□□□ -0.81
USP38-201ENST00000307017 WT1-ASQ06250 92 aa10.01□□□□□ -0.81
USP38-201ENST00000307017 LINC01356Q8N9X3 169 aa10.01□□□□□ -0.81
USP38-201ENST00000307017 F8W1H4 67 aa10□□□□□ -0.81
USP38-201ENST00000307017 Q0VG73 95 aa10□□□□□ -0.81
USP38-201ENST00000307017 FHL1Q13642 323 aa10□□□□□ -0.81
USP38-201ENST00000307017 SP5Q6BEB4 398 aaPredicted RBP10□□□□□ -0.81
USP38-201ENST00000307017 LYPD6Q86Y78 171 aa10□□□□□ -0.81
USP38-201ENST00000307017 MSRB1Q9NZV6 116 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms