RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CA1P00915 261 aaPredicted RBP12.73□□□□□ -0.37
CLN3-252ENST00000636907 RPS10P46783 165 aaKnown RBP12.73□□□□□ -0.37
CLN3-252ENST00000636907 GBGT1Q8N5D6 347 aa12.73□□□□□ -0.37
CLN3-252ENST00000636907 ZNF738Q8NE65 137 aa12.73□□□□□ -0.37
CLN3-252ENST00000636907 DCANP1Q8TF63 244 aa12.73□□□□□ -0.37
CLN3-252ENST00000636907 PRR25Q96S07 402 aa12.73□□□□□ -0.37
CLN3-252ENST00000636907 CYSRT1A8MQ03 144 aa12.72□□□□□ -0.37
CLN3-252ENST00000636907 FHL3Q13643 280 aa12.72□□□□□ -0.37
CLN3-252ENST00000636907 OR9G4Q8NGQ1 327 aa12.72□□□□□ -0.37
CLN3-252ENST00000636907 MS4A6AQ9H2W1 248 aa12.72□□□□□ -0.37
CLN3-252ENST00000636907 PEMTQ9UBM1 199 aa12.72□□□□□ -0.37
CLN3-252ENST00000636907 M0QZ24 198 aa12.71□□□□□ -0.37
CLN3-252ENST00000636907 SAPCD1Q5SSQ6 148 aa12.71□□□□□ -0.37
CLN3-252ENST00000636907 WFDC3Q8IUB2 231 aa12.71□□□□□ -0.37
CLN3-252ENST00000636907 GPR61Q9BZJ8 451 aa12.71□□□□□ -0.37
CLN3-252ENST00000636907 AGPAT4-IT1Q9H0P7 198 aa12.71□□□□□ -0.37
CLN3-252ENST00000636907 SETXQ7Z333 2677 aaKnown RBP12.71□□□□□ -0.37
CLN3-252ENST00000636907 CCL24O00175 119 aa12.7□□□□□ -0.38
CLN3-252ENST00000636907 CRIP1P50238 77 aa12.7□□□□□ -0.38
CLN3-252ENST00000636907 SMIM27A0A1W2PRY6 76 aa12.7□□□□□ -0.38
CLN3-252ENST00000636907 P01737 135 aa12.7□□□□□ -0.38
CLN3-252ENST00000636907 TCL1AP56279 114 aa12.7□□□□□ -0.38
CLN3-252ENST00000636907 KRTAP10-3P60369 221 aa12.7□□□□□ -0.38
CLN3-252ENST00000636907 C9orf47Q6ZRZ4 202 aa12.7□□□□□ -0.38
CLN3-252ENST00000636907 COX8CQ7Z4L0 72 aa12.7□□□□□ -0.38
CLN3-252ENST00000636907 DAZAP1Q96EP5 407 aaKnown RBP12.7□□□□□ -0.38
CLN3-252ENST00000636907 RPP21Q9H633 154 aaKnown RBP12.7□□□□□ -0.38
CLN3-252ENST00000636907 CSN3P07498 182 aa12.69□□□□□ -0.38
CLN3-252ENST00000636907 ZNF705DP0CH99 300 aaPredicted RBP12.69□□□□□ -0.38
CLN3-252ENST00000636907 ZNF705BP0CI00 300 aaPredicted RBP12.69□□□□□ -0.38
CLN3-252ENST00000636907 ID1P41134 155 aa12.69□□□□□ -0.38
CLN3-252ENST00000636907 TFPI2P48307 235 aa12.69□□□□□ -0.38
CLN3-252ENST00000636907 DEFB1P60022 68 aa12.69□□□□□ -0.38
CLN3-252ENST00000636907 SAMD13Q5VXD3 122 aa12.69□□□□□ -0.38
CLN3-252ENST00000636907 ADARB2-AS1A8MUL3 147 aa12.68□□□□□ -0.38
CLN3-252ENST00000636907 C1orf196B1AJZ1 125 aa12.68□□□□□ -0.38
CLN3-252ENST00000636907 NPIPB6E9PJ23 425 aa12.68□□□□□ -0.38
CLN3-252ENST00000636907 OVOL1O14753 267 aa12.68□□□□□ -0.38
CLN3-252ENST00000636907 TYMSP04818 313 aa12.68□□□□□ -0.38
CLN3-252ENST00000636907 CT45A10P0DMU9 189 aa12.68□□□□□ -0.38
CLN3-252ENST00000636907 ZNF138P52744 262 aa12.68□□□□□ -0.38
CLN3-252ENST00000636907 TMEM78Q5T7P6 136 aa12.68□□□□□ -0.38
CLN3-252ENST00000636907 NDFIP1Q9BT67 221 aa12.68□□□□□ -0.38
CLN3-252ENST00000636907 SRD5A3Q9H8P0 318 aa12.68□□□□□ -0.38
CLN3-252ENST00000636907 F8P00451 2351 aa12.68□□□□□ -0.38
CLN3-252ENST00000636907 TRAV9-1A0A075B6T8 112 aa12.67□□□□□ -0.38
CLN3-252ENST00000636907 K7EQG2 157 aa12.67□□□□□ -0.38
CLN3-252ENST00000636907 CT83Q5H943 113 aa12.67□□□□□ -0.38
CLN3-252ENST00000636907 ZFP82Q8N141 532 aa12.67□□□□□ -0.38
CLN3-252ENST00000636907 BTF3L4Q96K17 158 aa12.67□□□□□ -0.38
CLN3-252ENST00000636907 SETD2Q9BYW2 2564 aaPredicted RBP12.67□□□□□ -0.38
CLN3-252ENST00000636907 F6UB75 175 aa12.67□□□□□ -0.38
CLN3-252ENST00000636907 ZNF80P51504 273 aaPredicted RBP12.67□□□□□ -0.38
CLN3-252ENST00000636907 NSUN5P1Q3KNT7 163 aa12.67□□□□□ -0.38
CLN3-252ENST00000636907 TSKUQ8WUA8 353 aa12.67□□□□□ -0.38
CLN3-252ENST00000636907 SH2D1AO60880 128 aa12.66□□□□□ -0.38
CLN3-252ENST00000636907 TRGC2P03986 189 aa12.66□□□□□ -0.38
CLN3-252ENST00000636907 RAB5BP61020 215 aa12.66□□□□□ -0.38
CLN3-252ENST00000636907 SMUG1Q53HV7 270 aa12.66□□□□□ -0.38
CLN3-252ENST00000636907 OR4B1Q8NGF8 309 aa12.66□□□□□ -0.38
CLN3-252ENST00000636907 OR8A1Q8NGG7 326 aa12.66□□□□□ -0.38
CLN3-252ENST00000636907 OR10J6PQ8NGY7 276 aa12.66□□□□□ -0.38
CLN3-252ENST00000636907 NEU1Q99519 415 aa12.66□□□□□ -0.38
CLN3-252ENST00000636907 PPP1R14DQ9NXH3 145 aa12.66□□□□□ -0.38
CLN3-252ENST00000636907 RPL19P84098 196 aaKnown RBP12.65□□□□□ -0.38
CLN3-252ENST00000636907 HIST1H1AQ02539 215 aaPredicted RBP12.65□□□□□ -0.38
CLN3-252ENST00000636907 FAM162BQ5T6X4 162 aa12.65□□□□□ -0.38
CLN3-252ENST00000636907 OR2D3Q8NGH3 330 aa12.65□□□□□ -0.38
CLN3-252ENST00000636907 A8MWL6 223 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 SPINK4O60575 86 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 ZNF688P0C7X2 276 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 NUP35Q8NFH5 326 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 DYNLRB2Q8TF09 96 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 LINC00477Q96M19 166 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 NAT8BQ9UHF3 227 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 A0A1B0GUS0 222 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 IZUMO1RA6ND01 250 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 HIGD1CA8MV81 97 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 FRMD6-AS1P0C7T7 363 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 SNRPD3P62318 126 aaKnown RBP12.64□□□□□ -0.39
CLN3-252ENST00000636907 PAFAH1B2P68402 229 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 PSMG4Q5JS54 123 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 GTSF1Q8WW33 167 aa12.64□□□□□ -0.39
CLN3-252ENST00000636907 C2CD3Q4AC94 2353 aa12.63□□□□□ -0.39
CLN3-252ENST00000636907 GZMBP10144 247 aa12.63□□□□□ -0.39
CLN3-252ENST00000636907 DEFB114Q30KQ6 69 aa12.63□□□□□ -0.39
CLN3-252ENST00000636907 RBPMS2Q6ZRY4 209 aaKnown RBP12.63□□□□□ -0.39
CLN3-252ENST00000636907 NDUFA11Q86Y39 141 aa12.63□□□□□ -0.39
CLN3-252ENST00000636907 TMEM61Q8N0U2 210 aa12.63□□□□□ -0.39
CLN3-252ENST00000636907 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.63□□□□□ -0.39
CLN3-252ENST00000636907 PHOX2AO14813 284 aa12.62□□□□□ -0.39
CLN3-252ENST00000636907 GFRA4Q9GZZ7 299 aa12.62□□□□□ -0.39
CLN3-252ENST00000636907 LENEPQ9Y5L5 61 aa12.62□□□□□ -0.39
CLN3-252ENST00000636907 ACTL10Q5JWF8 245 aa12.61□□□□□ -0.39
CLN3-252ENST00000636907 GDF5OSQ5U4N7 250 aa12.61□□□□□ -0.39
CLN3-252ENST00000636907 MRPL54Q6P161 138 aaKnown RBP12.61□□□□□ -0.39
CLN3-252ENST00000636907 FRZBQ92765 325 aa12.61□□□□□ -0.39
CLN3-252ENST00000636907 TMEM189A5PLL7 270 aa12.61□□□□□ -0.39
CLN3-252ENST00000636907 FABP5P3A8MUU1 101 aa12.61□□□□□ -0.39
CLN3-252ENST00000636907 CD300EQ496F6 205 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 151.4 ms