RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 IGHG3P01860 377 aa8.75□□□□□ -1.01
CLN3-244ENST00000636147 CD59P13987 128 aa8.75□□□□□ -1.01
CLN3-244ENST00000636147 EFNA4P52798 201 aa8.75□□□□□ -1.01
CLN3-244ENST00000636147 NBR2O15453 112 aa8.75□□□□□ -1.01
CLN3-244ENST00000636147 RNASE6Q93091 150 aaKnown RBP8.75□□□□□ -1.01
CLN3-244ENST00000636147 MLST8Q9BVC4 326 aa8.75□□□□□ -1.01
CLN3-244ENST00000636147 DSCAMO60469 2012 aa8.75□□□□□ -1.01
CLN3-244ENST00000636147 TRBV25-1A0A075B6N4 114 aa8.75□□□□□ -1.01
CLN3-244ENST00000636147 LY6HO94772 140 aa8.75□□□□□ -1.01
CLN3-244ENST00000636147 RAB9AP51151 201 aa8.75□□□□□ -1.01
CLN3-244ENST00000636147 ADIPOQQ15848 244 aa8.75□□□□□ -1.01
CLN3-244ENST00000636147 FAM74A4Q5TZK3 123 aa8.75□□□□□ -1.01
CLN3-244ENST00000636147 BOD1L2Q8IYS8 172 aa8.75□□□□□ -1.01
CLN3-244ENST00000636147 PRSS22Q9GZN4 317 aa8.75□□□□□ -1.01
CLN3-244ENST00000636147 SPINK8P0C7L1 97 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 C2orf91Q6ZV80 131 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 LINC01560Q8TB33 94 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 GLMPQ8WWB7 406 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 WDFY4Q6ZS81 3184 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 SPRY2O43597 315 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 LHBP01229 141 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 EGR2P11161 476 aaPredicted RBP8.74□□□□□ -1.01
CLN3-244ENST00000636147 RNF182Q8N6D2 247 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 NCOR1P1Q9H4R4 102 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 A0A1W2PNU3 283 aaPredicted RBP8.74□□□□□ -1.01
CLN3-244ENST00000636147 CGB3P0DN86 165 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 CGB7P0DN87 165 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 SRSF1Q07955 248 aaKnown RBP eCLIP8.74□□□□□ -1.01
CLN3-244ENST00000636147 KLRD1Q13241 179 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 LAGE3Q14657 143 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 CLEC19AQ6UXS0 136 aa8.74□□□□□ -1.01
CLN3-244ENST00000636147 Q71RC1 249 aaPredicted RBP8.74□□□□□ -1.01
CLN3-244ENST00000636147 CHTOPQ9Y3Y2 248 aaKnown RBP8.74□□□□□ -1.01
CLN3-244ENST00000636147 CRXO43186 299 aaPredicted RBP8.73□□□□□ -1.01
CLN3-244ENST00000636147 IGKV1-17P01599 117 aa8.73□□□□□ -1.01
CLN3-244ENST00000636147 ATP5G2Q06055 141 aa8.73□□□□□ -1.01
CLN3-244ENST00000636147 PRR25Q96S07 402 aa8.73□□□□□ -1.01
CLN3-244ENST00000636147 ARHGAP32A7KAX9 2087 aa8.73□□□□□ -1.01
CLN3-244ENST00000636147 SYT8Q8NBV8 401 aa8.73□□□□□ -1.01
CLN3-244ENST00000636147 EYSQ5T1H1 3165 aa8.73□□□□□ -1.01
CLN3-244ENST00000636147 PRTN3P24158 256 aa8.73□□□□□ -1.01
CLN3-244ENST00000636147 GATA4P43694 442 aa8.73□□□□□ -1.01
CLN3-244ENST00000636147 METTL26Q96S19 204 aa8.73□□□□□ -1.01
CLN3-244ENST00000636147 ATP6V0BQ99437 205 aa8.73□□□□□ -1.01
CLN3-244ENST00000636147 TRAV8-2A0A0B4J237 113 aa8.72□□□□□ -1.01
CLN3-244ENST00000636147 LOXP28300 417 aaPredicted RBP8.72□□□□□ -1.01
CLN3-244ENST00000636147 CLUHP3Q96NS8 147 aa8.72□□□□□ -1.01
CLN3-244ENST00000636147 DSPP15924 2871 aaKnown RBP8.72□□□□□ -1.01
CLN3-244ENST00000636147 BUB1B-PAK6H3BSN5 160 aa8.72□□□□□ -1.01
CLN3-244ENST00000636147 PSMG4Q5JS54 123 aa8.72□□□□□ -1.01
CLN3-244ENST00000636147 ZNF491Q8N8L2 437 aa8.72□□□□□ -1.01
CLN3-244ENST00000636147 GEMIN7Q9H840 131 aaKnown RBP8.72□□□□□ -1.01
CLN3-244ENST00000636147 IGLV3-9A0A075B6K5 115 aa8.72□□□□□ -1.01
CLN3-244ENST00000636147 LINC01549A6NIU2 74 aa8.72□□□□□ -1.01
CLN3-244ENST00000636147 TTC32Q5I0X7 151 aa8.72□□□□□ -1.01
CLN3-244ENST00000636147 CEND1Q8N111 149 aa8.72□□□□□ -1.01
CLN3-244ENST00000636147 LYPD1Q8N2G4 141 aa8.72□□□□□ -1.01
CLN3-244ENST00000636147 ANAPC13Q9BS18 74 aa8.72□□□□□ -1.01
CLN3-244ENST00000636147 IGHV3-64A0A075B6Q5 118 aa8.71□□□□□ -1.01
CLN3-244ENST00000636147 APOBEC3AP31941 199 aaPredicted RBP8.71□□□□□ -1.01
CLN3-244ENST00000636147 C12orf74Q32Q52 190 aa8.71□□□□□ -1.01
CLN3-244ENST00000636147 RUSC1-AS1Q66K80 236 aa8.71□□□□□ -1.01
CLN3-244ENST00000636147 ZNF562Q6V9R5 426 aa8.71□□□□□ -1.01
CLN3-244ENST00000636147 SIGLEC15Q6ZMC9 328 aa8.71□□□□□ -1.01
CLN3-244ENST00000636147 TNFRSF14Q92956 283 aa8.71□□□□□ -1.01
CLN3-244ENST00000636147 SMPXQ9UHP9 88 aa8.71□□□□□ -1.01
CLN3-244ENST00000636147 LINC00527Q9UJ94 153 aa8.71□□□□□ -1.01
CLN3-244ENST00000636147 WNK1Q9H4A3 2382 aa8.71□□□□□ -1.01
CLN3-244ENST00000636147 CEP295Q9C0D2 2601 aa8.71□□□□□ -1.02
CLN3-244ENST00000636147 IGKV3-20P01619 116 aa8.71□□□□□ -1.02
CLN3-244ENST00000636147 ZNF883P0CG24 379 aa8.71□□□□□ -1.02
CLN3-244ENST00000636147 CR1LQ2VPA4 569 aa8.71□□□□□ -1.02
CLN3-244ENST00000636147 NACAE9PAV3 2078 aa8.71□□□□□ -1.02
CLN3-244ENST00000636147 FOXE3Q13461 319 aa8.71□□□□□ -1.02
CLN3-244ENST00000636147 CCDC144NLQ6NUI1 221 aa8.71□□□□□ -1.02
CLN3-244ENST00000636147 DTX2Q86UW9 622 aa8.71□□□□□ -1.02
CLN3-244ENST00000636147 CTSZQ9UBR2 303 aa8.71□□□□□ -1.02
CLN3-244ENST00000636147 MBD3L4A6NDZ8 208 aaPredicted RBP8.7□□□□□ -1.02
CLN3-244ENST00000636147 MBD3L3A6NE82 208 aaPredicted RBP8.7□□□□□ -1.02
CLN3-244ENST00000636147 MBD3L5A6NJ08 208 aaPredicted RBP8.7□□□□□ -1.02
CLN3-244ENST00000636147 F8W1H4 67 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 LGALS3P17931 250 aaKnown RBP8.7□□□□□ -1.02
CLN3-244ENST00000636147 NDPQ00604 133 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 TMEM155Q4W5P6 130 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 CFAP161Q6P656 301 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 C14orf178Q8N769 122 aaPredicted RBP8.7□□□□□ -1.02
CLN3-244ENST00000636147 OR10J6PQ8NGY7 276 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 MBD3L2Q8NHZ7 208 aaPredicted RBP8.7□□□□□ -1.02
CLN3-244ENST00000636147 SRSF8Q9BRL6 282 aaKnown RBP8.7□□□□□ -1.02
CLN3-244ENST00000636147 UBTD1Q9HAC8 227 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 SIVA1O15304 175 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 IL17RELQ6ZVW7 336 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 DLX4Q92988 240 aaPredicted RBP8.7□□□□□ -1.02
CLN3-244ENST00000636147 TMEM14CQ9P0S9 112 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 ATRXP46100 2492 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 IGKV2D-26A0A0A0MRZ7 120 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 IGLL5B9A064 214 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 H3BRN7 92 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 DKK4Q9UBT3 224 aa8.7□□□□□ -1.02
CLN3-244ENST00000636147 ZNF256Q9Y2P7 627 aaPredicted RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms