RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 AGPAT4-IT1Q9H0P7 198 aa17.1■□□□□ 0.33
PTPRF-216ENST00000617451 TMEM14CQ9P0S9 112 aa17.1■□□□□ 0.33
PTPRF-216ENST00000617451 PRELID1Q9Y255 219 aa17.1■□□□□ 0.33
PTPRF-216ENST00000617451 SPINK4O60575 86 aa17.09■□□□□ 0.33
PTPRF-216ENST00000617451 BTN1A1Q13410 526 aa17.09■□□□□ 0.33
PTPRF-216ENST00000617451 CHAC2Q8WUX2 184 aa17.09■□□□□ 0.33
PTPRF-216ENST00000617451 KLF12Q9Y4X4 402 aa17.09■□□□□ 0.33
PTPRF-216ENST00000617451 UBE2L5PA0A1B0GUS4 154 aa17.08■□□□□ 0.32
PTPRF-216ENST00000617451 SIVA1O15304 175 aa17.08■□□□□ 0.32
PTPRF-216ENST00000617451 HIST1H1EP10412 219 aaKnown RBP17.08■□□□□ 0.32
PTPRF-216ENST00000617451 RNASE4P34096 147 aaKnown RBP17.08■□□□□ 0.32
PTPRF-216ENST00000617451 PDE6HQ13956 83 aa17.08■□□□□ 0.32
PTPRF-216ENST00000617451 C5orf51A6NDU8 294 aa17.07■□□□□ 0.32
PTPRF-216ENST00000617451 PLA2G10O15496 165 aa17.07■□□□□ 0.32
PTPRF-216ENST00000617451 CRISP2P16562 243 aa17.07■□□□□ 0.32
PTPRF-216ENST00000617451 S100A11P31949 105 aa17.07■□□□□ 0.32
PTPRF-216ENST00000617451 SULT1A1P50225 295 aa17.07■□□□□ 0.32
PTPRF-216ENST00000617451 TCL1AP56279 114 aa17.07■□□□□ 0.32
PTPRF-216ENST00000617451 BAXQ07812 192 aa17.07■□□□□ 0.32
PTPRF-216ENST00000617451 LYRM2Q9NU23 88 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-216ENST00000617451 TIMM9Q9Y5J7 89 aa17.07■□□□□ 0.32
PTPRF-216ENST00000617451 MPDU1O75352 247 aa17.06■□□□□ 0.32
PTPRF-216ENST00000617451 PVALBP20472 110 aaPredicted RBP17.06■□□□□ 0.32
PTPRF-216ENST00000617451 C9orf47Q6ZRZ4 202 aa17.06■□□□□ 0.32
PTPRF-216ENST00000617451 C2orf50Q96LR7 162 aa17.06■□□□□ 0.32
PTPRF-216ENST00000617451 IGSF23A1L1A6 192 aa17.05■□□□□ 0.32
PTPRF-216ENST00000617451 PAX4O43316 350 aa17.05■□□□□ 0.32
PTPRF-216ENST00000617451 NXPH4O95158 308 aa17.05■□□□□ 0.32
PTPRF-216ENST00000617451 GPX1P07203 203 aa17.05■□□□□ 0.32
PTPRF-216ENST00000617451 NMBP08949 121 aa17.05■□□□□ 0.32
PTPRF-216ENST00000617451 PYYP10082 97 aa17.05■□□□□ 0.32
PTPRF-216ENST00000617451 IBA57Q5T440 356 aaKnown RBP17.05■□□□□ 0.32
PTPRF-216ENST00000617451 EXOC3-AS1Q8N2X6 119 aa17.05■□□□□ 0.32
PTPRF-216ENST00000617451 TMEM252Q8N6L7 170 aa17.05■□□□□ 0.32
PTPRF-216ENST00000617451 ST6GAL2Q96JF0 529 aa17.05■□□□□ 0.32
PTPRF-216ENST00000617451 PGPEP1Q9NXJ5 209 aa17.05■□□□□ 0.32
PTPRF-216ENST00000617451 ICOSQ9Y6W8 199 aa17.05■□□□□ 0.32
PTPRF-216ENST00000617451 FAT1Q14517 4588 aa17.04■□□□□ 0.32
PTPRF-216ENST00000617451 TRAV6A0A075B6T7 132 aa17.04■□□□□ 0.32
PTPRF-216ENST00000617451 LYRM1O43325 122 aa17.04■□□□□ 0.32
PTPRF-216ENST00000617451 TCRBP04435 133 aa17.04■□□□□ 0.32
PTPRF-216ENST00000617451 BLNKQ8WV28 456 aa17.04■□□□□ 0.32
PTPRF-216ENST00000617451 SEC22CQ9BRL7 303 aa17.04■□□□□ 0.32
PTPRF-216ENST00000617451 FGF7P21781 194 aa17.03■□□□□ 0.32
PTPRF-216ENST00000617451 HBG1P69891 147 aa17.03■□□□□ 0.32
PTPRF-216ENST00000617451 HBG2P69892 147 aa17.03■□□□□ 0.32
PTPRF-216ENST00000617451 IL15RAQ13261 267 aa17.03■□□□□ 0.32
PTPRF-216ENST00000617451 STX12Q86Y82 276 aa17.03■□□□□ 0.32
PTPRF-216ENST00000617451 ZFAND2AQ8N6M9 145 aa17.03■□□□□ 0.32
PTPRF-216ENST00000617451 AAMDCQ9H7C9 122 aa17.03■□□□□ 0.32
PTPRF-216ENST00000617451 TP53TG3Q9ULZ0 132 aa17.03■□□□□ 0.32
PTPRF-216ENST00000617451 S100A10P60903 97 aa17.02■□□□□ 0.32
PTPRF-216ENST00000617451 ATP6V1FQ16864 119 aa17.02■□□□□ 0.32
PTPRF-216ENST00000617451 GCSAMLQ5JQS6 135 aa17.02■□□□□ 0.32
PTPRF-216ENST00000617451 PRR9Q5T870 116 aa17.02■□□□□ 0.32
PTPRF-216ENST00000617451 PRO0255Q9UI72 69 aa17.02■□□□□ 0.32
PTPRF-216ENST00000617451 IGKV2-40A0A087WW87 121 aaPredicted RBP17.01■□□□□ 0.31
PTPRF-216ENST00000617451 RGS13O14921 159 aa17.01■□□□□ 0.31
PTPRF-216ENST00000617451 IGKV2D-40P01614 121 aaPredicted RBP17.01■□□□□ 0.31
PTPRF-216ENST00000617451 IGHV3-53P01767 116 aa17.01■□□□□ 0.31
PTPRF-216ENST00000617451 ICAM4Q14773 271 aa17.01■□□□□ 0.31
PTPRF-216ENST00000617451 TMEM78Q5T7P6 136 aa17.01■□□□□ 0.31
PTPRF-216ENST00000617451 Q6ZQT7 251 aa17.01■□□□□ 0.31
PTPRF-216ENST00000617451 VGLL1Q99990 258 aa17.01■□□□□ 0.31
PTPRF-216ENST00000617451 NUDT15Q9NV35 164 aa17.01■□□□□ 0.31
PTPRF-216ENST00000617451 MRPL16Q9NX20 251 aaKnown RBP17.01■□□□□ 0.31
PTPRF-216ENST00000617451 IGHV1OR15-1A0A075B7D0 117 aa17■□□□□ 0.31
PTPRF-216ENST00000617451 CRYBA4P53673 196 aa17■□□□□ 0.31
PTPRF-216ENST00000617451 SLAQ13239 276 aa17■□□□□ 0.31
PTPRF-216ENST00000617451 RAB32Q13637 225 aa17■□□□□ 0.31
PTPRF-216ENST00000617451 LYPD5Q6UWN5 251 aa17■□□□□ 0.31
PTPRF-216ENST00000617451 SLC25A2Q9BXI2 301 aa17■□□□□ 0.31
PTPRF-216ENST00000617451 HHLA3Q9XRX5 114 aa17■□□□□ 0.31
PTPRF-216ENST00000617451 TNFRSF18Q9Y5U5 241 aa17■□□□□ 0.31
PTPRF-216ENST00000617451 EPM2AB3EWF7 344 aa16.99■□□□□ 0.31
PTPRF-216ENST00000617451 EREGO14944 169 aa16.99■□□□□ 0.31
PTPRF-216ENST00000617451 FUSP35637 526 aaKnown RBP eCLIP16.99■□□□□ 0.313e-9■■■■■ 29.2
PTPRF-216ENST00000617451 ERVFC1-1P60608 527 aa16.99■□□□□ 0.31
PTPRF-216ENST00000617451 FHL2Q14192 279 aa16.99■□□□□ 0.31
PTPRF-216ENST00000617451 FAM122CQ6P4D5 195 aa16.99■□□□□ 0.31
PTPRF-216ENST00000617451 FAM167A-AS1Q96KT0 104 aa16.99■□□□□ 0.31
PTPRF-216ENST00000617451 NPCDR1Q9BY65 106 aa16.99■□□□□ 0.31
PTPRF-216ENST00000617451 ZNF492Q9P255 531 aa16.99■□□□□ 0.31
PTPRF-216ENST00000617451 CDPF1Q6NVV7 123 aa16.98■□□□□ 0.31
PTPRF-216ENST00000617451 GPN1Q9HCN4 374 aaPredicted RBP16.98■□□□□ 0.31
PTPRF-216ENST00000617451 PTTG2Q9NZH5 202 aa16.98■□□□□ 0.31
PTPRF-216ENST00000617451 VPS13BQ7Z7G8 4022 aa16.98■□□□□ 0.31
PTPRF-216ENST00000617451 NBEAP1P0C6P0 100 aa16.97■□□□□ 0.31
PTPRF-216ENST00000617451 MRPL23Q16540 153 aaKnown RBP16.97■□□□□ 0.31
PTPRF-216ENST00000617451 NFE4Q86UQ8 179 aa16.97■□□□□ 0.31
PTPRF-216ENST00000617451 C8orf49Q96NF6 230 aa16.97■□□□□ 0.31
PTPRF-216ENST00000617451 ARPC5LQ9BPX5 153 aa16.97■□□□□ 0.31
PTPRF-216ENST00000617451 PRAF2O60831 178 aa16.96■□□□□ 0.31
PTPRF-216ENST00000617451 XGP55808 180 aa16.96■□□□□ 0.31
PTPRF-216ENST00000617451 MIR17HGQ75NE6 70 aa16.96■□□□□ 0.31
PTPRF-216ENST00000617451 TRBV7-9A0A0J9YWB2 115 aa16.95■□□□□ 0.3
PTPRF-216ENST00000617451 H2AFB2P0C5Z0 115 aa16.95■□□□□ 0.3
PTPRF-216ENST00000617451 ZNF138P52744 262 aa16.95■□□□□ 0.3
PTPRF-216ENST00000617451 NEGR1Q7Z3B1 354 aa16.95■□□□□ 0.3
PTPRF-216ENST00000617451 LYPD1Q8N2G4 141 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms