RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 A0A1B0GV50 99 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 ZNF727A8MUV8 499 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 SLC17A3O00476 420 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 UBE2CO00762 179 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 CXorf1O96002 111 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 S100A9P06702 114 aaKnown RBP6.44□□□□□ -1.38
TRIM28-214ENST00000600840 SNRPCP09234 159 aaKnown RBP6.44□□□□□ -1.38
TRIM28-214ENST00000600840 NBEAP1P0C6P0 100 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 S100PP25815 95 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 GALR1P47211 349 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 TMEM241Q24JQ0 296 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 PQLC2Q6ZP29 291 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 STXBP6Q8NFX7 210 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 LINC00476Q8WZB0 136 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 C20orf173Q96LM9 149 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 YPEL4Q96NS1 127 aa6.44□□□□□ -1.38
TRIM28-214ENST00000600840 TRBV24-1A0A075B6N3 115 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 OR4C46A6NHA9 309 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 H3BTX0 84 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 ISLRO14498 428 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 LY6G6CO95867 125 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 SMIM6P0DI80 62 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 HLA-DMBP28068 263 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 GCHFRP30047 84 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 TFPI2P48307 235 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 MEOX2P50222 304 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 PAFAH1B2P68402 229 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 IGFL4Q6B9Z1 124 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 WFDC3Q8IUB2 231 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 LINC00518Q8N0U6 118 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 IMMP2LQ96T52 175 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 SMIM7Q9BQ49 75 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 PAXXQ9BUH6 204 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 TMPRSS5Q9H3S3 457 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 SAV1Q9H4B6 383 aaPredicted RBP6.43□□□□□ -1.38
TRIM28-214ENST00000600840 MAP6D1Q9H9H5 199 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 FRAS1Q86XX4 4008 aa6.43□□□□□ -1.38
TRIM28-214ENST00000600840 C5orf52A6NGY3 159 aa6.42□□□□□ -1.38
TRIM28-214ENST00000600840 A8MTW9 85 aa6.42□□□□□ -1.38
TRIM28-214ENST00000600840 OR10J4P0C629 311 aa6.42□□□□□ -1.38
TRIM28-214ENST00000600840 ARL14EPLP0DKL9 152 aa6.42□□□□□ -1.38
TRIM28-214ENST00000600840 CEBPGP53567 150 aa6.42□□□□□ -1.38
TRIM28-214ENST00000600840 TAS2R45P59539 299 aa6.42□□□□□ -1.38
TRIM28-214ENST00000600840 RPL11P62913 178 aaKnown RBP6.42□□□□□ -1.38
TRIM28-214ENST00000600840 RPL19P84098 196 aaKnown RBP6.42□□□□□ -1.38
TRIM28-214ENST00000600840 PDE6HQ13956 83 aa6.42□□□□□ -1.38
TRIM28-214ENST00000600840 ZNF124Q15973 351 aa6.42□□□□□ -1.38
TRIM28-214ENST00000600840 KCNIP4Q6PIL6 250 aa6.42□□□□□ -1.38
TRIM28-214ENST00000600840 OVOL2Q9BRP0 275 aa6.42□□□□□ -1.38
TRIM28-214ENST00000600840 TMEM167BQ9NRX6 74 aa6.42□□□□□ -1.38
TRIM28-214ENST00000600840 LY96Q9Y6Y9 160 aa6.42□□□□□ -1.38
TRIM28-214ENST00000600840 ALMS1Q8TCU4 4167 aa6.42□□□□□ -1.38
TRIM28-214ENST00000600840 TRAV9-1A0A075B6T8 112 aa6.41□□□□□ -1.38
TRIM28-214ENST00000600840 C11orf94C9JXX5 98 aa6.41□□□□□ -1.38
TRIM28-214ENST00000600840 PRAC2D3DTV9 90 aa6.41□□□□□ -1.38
TRIM28-214ENST00000600840 OR7C2O60412 319 aa6.41□□□□□ -1.38
TRIM28-214ENST00000600840 ZNF688P0C7X2 276 aa6.41□□□□□ -1.38
TRIM28-214ENST00000600840 RPS10P46783 165 aaKnown RBP6.41□□□□□ -1.38
TRIM28-214ENST00000600840 FGF8P55075 233 aaPredicted RBP6.41□□□□□ -1.38
TRIM28-214ENST00000600840 CMC4P56277 68 aaPredicted RBP6.41□□□□□ -1.38
TRIM28-214ENST00000600840 DEFB131AP59861 70 aa6.41□□□□□ -1.38
TRIM28-214ENST00000600840 DEFB1P60022 68 aa6.41□□□□□ -1.38
TRIM28-214ENST00000600840 ELOBQ15370 118 aa6.41□□□□□ -1.38
TRIM28-214ENST00000600840 PSG3Q16557 428 aa6.41□□□□□ -1.38
TRIM28-214ENST00000600840 LYPD1Q8N2G4 141 aa6.41□□□□□ -1.38
TRIM28-214ENST00000600840 RPUSD4Q96CM3 377 aaKnown RBP6.41□□□□□ -1.38
TRIM28-214ENST00000600840 ZNF705FA8MVS1 300 aaPredicted RBP6.4□□□□□ -1.38
TRIM28-214ENST00000600840 H7BYZ3 331 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 M0R3E3 92 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 AKR1D1P51857 326 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 UBE2L3P68036 154 aaKnown RBP6.4□□□□□ -1.38
TRIM28-214ENST00000600840 GDF5OSQ5U4N7 250 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 SAMD13Q5VXD3 122 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 APRG1Q8IVJ8 170 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 EXOC3-AS1Q8N2X6 119 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 RNF182Q8N6D2 247 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 BLNKQ8WV28 456 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 ISOC2Q96AB3 205 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 MRPL53Q96EL3 112 aaKnown RBP6.4□□□□□ -1.38
TRIM28-214ENST00000600840 FAM210BQ96KR6 192 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 C16orf92Q96LL3 132 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 CLUHP3Q96NS8 147 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 SLC50A1Q9BRV3 221 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 PARLQ9H300 379 aa6.4□□□□□ -1.38
TRIM28-214ENST00000600840 YTHDF2Q9Y5A9 579 aaKnown RBP6.4□□□□□ -1.38
TRIM28-214ENST00000600840 LOC102724200A0A096LPH7 203 aaPredicted RBP6.39□□□□□ -1.39
TRIM28-214ENST00000600840 A0A0J9YX75 114 aa6.39□□□□□ -1.39
TRIM28-214ENST00000600840 A0A1W2PRE2 83 aa6.39□□□□□ -1.39
TRIM28-214ENST00000600840 GGTLC3B5MD39 225 aa6.39□□□□□ -1.39
TRIM28-214ENST00000600840 F6UB75 175 aa6.39□□□□□ -1.39
TRIM28-214ENST00000600840 H3BMM0 161 aa6.39□□□□□ -1.39
TRIM28-214ENST00000600840 PAGE4O60829 102 aa6.39□□□□□ -1.39
TRIM28-214ENST00000600840 GIG44P09565 113 aaPredicted RBP6.39□□□□□ -1.39
TRIM28-214ENST00000600840 AKR1C3P42330 323 aa6.39□□□□□ -1.39
TRIM28-214ENST00000600840 FAM3BP58499 235 aaPredicted RBP6.39□□□□□ -1.39
TRIM28-214ENST00000600840 RANP62826 216 aaKnown RBP6.39□□□□□ -1.39
TRIM28-214ENST00000600840 PSG9Q00887 426 aa6.39□□□□□ -1.39
TRIM28-214ENST00000600840 ADIRFQ15847 76 aa6.39□□□□□ -1.39
TRIM28-214ENST00000600840 ZNF674Q2M3X9 581 aa6.39□□□□□ -1.39
TRIM28-214ENST00000600840 PSMG4Q5JS54 123 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms