RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 LRRK1Q38SD2 2015 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 PHF3Q92576 2039 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 DEFB131BA0A096LNP1 70 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 TRBV9A0A0B4J1U6 114 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 PRSS29PA6NIE9 313 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 LINC01548A6NM66 108 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 F8VVB4 439 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 F8VWA3 439 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 SMIM13P0DJ93 91 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 TAL2Q16559 108 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 Q6YL49 198 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 SHANK2-AS3Q9BTD1 123 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 IL36BQ9NZH7 164 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 LSM4Q9Y4Z0 139 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 CLDN16Q9Y5I7 305 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 MYLKQ15746 1914 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 A0A087WWL8 130 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 TRAV10A0A0B4J240 114 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 TRAV3A0A0B4J244 114 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 IGHV3-30P01768 117 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 IGHV3-33P01772 117 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 IGKV1-16P04430 117 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 IGHV3-30-3P0DP02 117 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 IGHV3-30-5P0DP03 117 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 FOXA3P55318 350 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 ZNF833PQ6ZTB9 187 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 APRG1Q8IVJ8 170 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 C14orf178Q8N769 122 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 ATP6V0E2Q8NHE4 81 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 SMIM2Q9BVW6 85 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 MIXL1Q9H2W2 232 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 GREB1LQ9C091 1923 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 TRAV12-2A0A075B6T6 113 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 IGHV4OR15-8A0A075B7B6 117 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 A0A087WW49 117 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 IGHV1-24A0A0C4DH33 117 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 HBDP02042 147 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 SPNP16150 400 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 RPL24P83731 157 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 IGFL4Q6B9Z1 124 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 LAIR2Q6ISS4 152 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 ODF3L1Q8IXM7 274 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 EXOC3-AS1Q8N2X6 119 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 LY6G5BQ8NDX9 201 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 SNHG12Q9BXW3 62 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 PARLQ9H300 379 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 PPP1R3EQ9H7J1 279 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 CTSZQ9UBR2 303 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 FRMPD3Q5JV73 1810 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 DYSFO75923 2080 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 IGKV1-27A0A075B6S5 117 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 TRAV8-1A0A0A6YYK1 113 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 NUPR2A6NF83 97 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 M0R2P5 195 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 BUB3O43684 328 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 ARMS2P0C7Q2 107 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 RNASE2P10153 161 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 NMSQ5H8A3 153 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 DNLZQ5SXM8 178 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 PRIMA1Q86XR5 153 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 C8orf31Q8N9H6 132 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 PLEKHB2Q96CS7 222 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 SFRP2Q96HF1 295 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 AJUBAQ96IF1 538 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 ZNF48Q96MX3 618 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 MRPL18Q9H0U6 180 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 MS4A6AQ9H2W1 248 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 PNRC2Q9NPJ4 139 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 LAMTOR3Q9UHA4 124 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 U3KQE9 123 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 SIPA1L1O43166 1804 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 FLNBO75369 2602 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 UNC79Q9P2D8 2635 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 TANC1Q9C0D5 1861 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 POLQO75417 2590 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 IGKV1-39P01597 117 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 IGHG2P01859 326 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 IGKV1D-39P04432 117 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 P0DMU3 169 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 FAM231AP0DMU4 169 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 FAM231CP0DMU5 169 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 FABP2P12104 132 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 UBE2AP49459 152 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 LMO4P61968 165 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 CCL20P78556 96 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 IFITM2Q01629 132 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 Q8TAT8 98 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 CAMK2N2Q96S95 79 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 DERL1Q9BUN8 251 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 V9GYH0 126 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 VWA8A3KMH1 1905 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 MYMXA0A1B0GTQ4 84 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 C2orf70A6NJV1 201 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 LINC00473A8K010 186 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 DEFB4AO15263 64 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 TCRAP04437 139 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 NHLRC4P0CG21 123 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 PMCHL1Q16048 86 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 C17orf58Q2M2W7 97 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 129.2 ms