RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 FGF8P55075 233 aaPredicted RBP12.52□□□□□ -0.41
CLN3-217ENST00000565354 ZNF726P1Q15940 193 aa12.52□□□□□ -0.41
CLN3-217ENST00000565354 TMEM78Q5T7P6 136 aa12.52□□□□□ -0.41
CLN3-217ENST00000565354 SLC51BQ86UW2 128 aa12.52□□□□□ -0.41
CLN3-217ENST00000565354 CSNK1G2-AS1Q8NCQ2 148 aa12.52□□□□□ -0.41
CLN3-217ENST00000565354 IGF2BP2-AS1Q96M15 143 aa12.52□□□□□ -0.41
CLN3-217ENST00000565354 MAP1LC3BQ9GZQ8 125 aa12.52□□□□□ -0.41
CLN3-217ENST00000565354 LEPP41159 167 aa12.51□□□□□ -0.41
CLN3-217ENST00000565354 CDKN1BP46527 198 aa12.51□□□□□ -0.41
CLN3-217ENST00000565354 ERCC8Q13216 396 aa12.51□□□□□ -0.41
CLN3-217ENST00000565354 C9orf62Q8N4C0 152 aa12.51□□□□□ -0.41
CLN3-217ENST00000565354 LINC00477Q96M19 166 aa12.51□□□□□ -0.41
CLN3-217ENST00000565354 HECTD4Q9Y4D8 3996 aa12.51□□□□□ -0.41
CLN3-217ENST00000565354 TRAV12-2A0A075B6T6 113 aa12.5□□□□□ -0.41
CLN3-217ENST00000565354 ZNF705EA8MWA4 302 aaPredicted RBP12.5□□□□□ -0.41
CLN3-217ENST00000565354 J3KRW8 73 aa12.5□□□□□ -0.41
CLN3-217ENST00000565354 SLC25A5P05141 298 aaKnown RBP12.5□□□□□ -0.41
CLN3-217ENST00000565354 MIFP14174 115 aa12.5□□□□□ -0.41
CLN3-217ENST00000565354 DPPA3Q6W0C5 159 aa12.5□□□□□ -0.41
CLN3-217ENST00000565354 LY6G6CO95867 125 aa12.49□□□□□ -0.41
CLN3-217ENST00000565354 FHITP49789 147 aa12.49□□□□□ -0.41
CLN3-217ENST00000565354 ODF3Q96PU9 254 aa12.49□□□□□ -0.41
CLN3-217ENST00000565354 PCLOQ9Y6V0 5065 aa12.48□□□□□ -0.41
CLN3-217ENST00000565354 DIRC3C9JPN6 131 aa12.48□□□□□ -0.41
CLN3-217ENST00000565354 DEFB4AO15263 64 aa12.48□□□□□ -0.41
CLN3-217ENST00000565354 CT45A10P0DMU9 189 aa12.48□□□□□ -0.41
CLN3-217ENST00000565354 UBE2G2P60604 165 aa12.48□□□□□ -0.41
CLN3-217ENST00000565354 C9orf47Q6ZRZ4 202 aa12.48□□□□□ -0.41
CLN3-217ENST00000565354 SUN5Q8TC36 379 aa12.48□□□□□ -0.41
CLN3-217ENST00000565354 SFT2D1Q8WV19 159 aa12.48□□□□□ -0.41
CLN3-217ENST00000565354 AGPAT4-IT1Q9H0P7 198 aa12.48□□□□□ -0.41
CLN3-217ENST00000565354 TMPRSS5Q9H3S3 457 aa12.48□□□□□ -0.41
CLN3-217ENST00000565354 X6R8D5 127 aa12.48□□□□□ -0.41
CLN3-217ENST00000565354 IGHV4-28A0A0C4DH34 117 aa12.47□□□□□ -0.41
CLN3-217ENST00000565354 A0A1B0GV50 99 aa12.47□□□□□ -0.41
CLN3-217ENST00000565354 RBAKDNA6NC62 111 aa12.47□□□□□ -0.41
CLN3-217ENST00000565354 HBE1P02100 147 aa12.47□□□□□ -0.41
CLN3-217ENST00000565354 H2AFB1P0C5Y9 115 aa12.47□□□□□ -0.41
CLN3-217ENST00000565354 RAB5CP51148 216 aa12.47□□□□□ -0.41
CLN3-217ENST00000565354 NKX2-5P52952 324 aaPredicted RBP12.47□□□□□ -0.41
CLN3-217ENST00000565354 SUMO1P63165 101 aaKnown RBP12.47□□□□□ -0.41
CLN3-217ENST00000565354 ZNF705AQ6ZN79 300 aaPredicted RBP12.47□□□□□ -0.41
CLN3-217ENST00000565354 C1orf158Q8N1D5 194 aa12.47□□□□□ -0.41
CLN3-217ENST00000565354 C5orf17Q8NAS9 161 aa12.47□□□□□ -0.41
CLN3-217ENST00000565354 VGLL1Q99990 258 aa12.47□□□□□ -0.41
CLN3-217ENST00000565354 C11orf68Q9H3H3 251 aaKnown RBP12.47□□□□□ -0.41
CLN3-217ENST00000565354 PLA2G2EQ9NZK7 142 aa12.47□□□□□ -0.41
CLN3-217ENST00000565354 A0A1W2PRE2 83 aa12.46□□□□□ -0.41
CLN3-217ENST00000565354 SMIM9A6NGZ8 99 aa12.46□□□□□ -0.41
CLN3-217ENST00000565354 K7EQM0 130 aa12.46□□□□□ -0.41
CLN3-217ENST00000565354 CRXO43186 299 aaPredicted RBP12.46□□□□□ -0.41
CLN3-217ENST00000565354 ZNF138P52744 262 aa12.46□□□□□ -0.41
CLN3-217ENST00000565354 GNG5P63218 68 aa12.46□□□□□ -0.41
CLN3-217ENST00000565354 RRN3P1Q2M238 152 aa12.46□□□□□ -0.41
CLN3-217ENST00000565354 GOLT1AQ6ZVE7 132 aa12.46□□□□□ -0.41
CLN3-217ENST00000565354 TMEM256Q8N2U0 113 aa12.46□□□□□ -0.41
CLN3-217ENST00000565354 ARL6IP6Q8N6S5 226 aa12.46□□□□□ -0.41
CLN3-217ENST00000565354 Q8NAQ8 132 aa12.46□□□□□ -0.41
CLN3-217ENST00000565354 LINC01587Q99440 93 aa12.46□□□□□ -0.41
CLN3-217ENST00000565354 NEU1Q99519 415 aa12.46□□□□□ -0.41
CLN3-217ENST00000565354 DNAH10Q8IVF4 4471 aa12.45□□□□□ -0.42
CLN3-217ENST00000565354 TEX46H3BTG2 121 aa12.45□□□□□ -0.42
CLN3-217ENST00000565354 IFNA7P01567 189 aa12.45□□□□□ -0.42
CLN3-217ENST00000565354 Q8TAT8 98 aa12.45□□□□□ -0.42
CLN3-217ENST00000565354 MBD3L1Q8WWY6 194 aa12.45□□□□□ -0.42
CLN3-217ENST00000565354 NIPSNAP3BQ9BS92 247 aa12.45□□□□□ -0.42
CLN3-217ENST00000565354 ZNF492Q9P255 531 aa12.45□□□□□ -0.42
CLN3-217ENST00000565354 SERTM2A0A1B0GWG4 89 aa12.44□□□□□ -0.42
CLN3-217ENST00000565354 GPX1P07203 203 aa12.44□□□□□ -0.42
CLN3-217ENST00000565354 HTN1P15515 57 aa12.44□□□□□ -0.42
CLN3-217ENST00000565354 SULT1A2P50226 295 aa12.44□□□□□ -0.42
CLN3-217ENST00000565354 GFI1BQ5VTD9 330 aa12.44□□□□□ -0.42
CLN3-217ENST00000565354 C20orf144Q9BQM9 153 aa12.44□□□□□ -0.42
CLN3-217ENST00000565354 NKX6-2Q9C056 277 aaPredicted RBP12.44□□□□□ -0.42
CLN3-217ENST00000565354 YTHDF2Q9Y5A9 579 aaKnown RBP12.44□□□□□ -0.42
CLN3-217ENST00000565354 TRAV12-3A0A0B4J271 114 aa12.43□□□□□ -0.42
CLN3-217ENST00000565354 LOC102723971A0A1B0GUV8 181 aa12.43□□□□□ -0.42
CLN3-217ENST00000565354 TMEM189A5PLL7 270 aa12.43□□□□□ -0.42
CLN3-217ENST00000565354 GGTLC3B5MD39 225 aa12.43□□□□□ -0.42
CLN3-217ENST00000565354 RBMY1A1P0DJD3 496 aaKnown RBP12.43□□□□□ -0.42
CLN3-217ENST00000565354 RBMY1CP0DJD4 496 aa12.43□□□□□ -0.42
CLN3-217ENST00000565354 EMP1P54849 157 aa12.43□□□□□ -0.42
CLN3-217ENST00000565354 KIR3DS1Q14943 382 aa12.43□□□□□ -0.42
CLN3-217ENST00000565354 RBMY1FQ15415 496 aaKnown RBP12.43□□□□□ -0.42
CLN3-217ENST00000565354 CST9LP1Q5W188 147 aa12.43□□□□□ -0.42
CLN3-217ENST00000565354 EPDR1Q9UM22 224 aa12.43□□□□□ -0.42
CLN3-217ENST00000565354 C7orf71A4D174 169 aa12.42□□□□□ -0.42
CLN3-217ENST00000565354 FAM74A7A6NL05 159 aa12.42□□□□□ -0.42
CLN3-217ENST00000565354 ZNF705GA8MUZ8 300 aaPredicted RBP12.42□□□□□ -0.42
CLN3-217ENST00000565354 H7BYZ3 331 aa12.42□□□□□ -0.42
CLN3-217ENST00000565354 TCRAP04437 139 aa12.42□□□□□ -0.42
CLN3-217ENST00000565354 RNASE4P34096 147 aaKnown RBP12.42□□□□□ -0.42
CLN3-217ENST00000565354 PPT1P50897 306 aa12.42□□□□□ -0.42
CLN3-217ENST00000565354 C11orf45Q8TAV5 145 aa12.42□□□□□ -0.42
CLN3-217ENST00000565354 NDFIP1Q9BT67 221 aa12.42□□□□□ -0.42
CLN3-217ENST00000565354 TRBV7-9A0A0J9YWB2 115 aa12.41□□□□□ -0.42
CLN3-217ENST00000565354 CXorf65A6NEN9 183 aa12.41□□□□□ -0.42
CLN3-217ENST00000565354 NMBP08949 121 aa12.41□□□□□ -0.42
CLN3-217ENST00000565354 CRISP2P16562 243 aa12.41□□□□□ -0.42
CLN3-217ENST00000565354 TAS2R60P59551 318 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms