RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 C9orf62Q8N4C0 152 aa6.59□□□□□ -1.35
VPS35-206ENST00000565228 ZFAND2AQ8N6M9 145 aa6.59□□□□□ -1.35
VPS35-206ENST00000565228 Q8TAT8 98 aa6.59□□□□□ -1.35
VPS35-206ENST00000565228 NEU1Q99519 415 aa6.59□□□□□ -1.35
VPS35-206ENST00000565228 YTHDF2Q9Y5A9 579 aaKnown RBP6.59□□□□□ -1.35
VPS35-206ENST00000565228 TRAV8-1A0A0A6YYK1 113 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 BORCS7-ASMTA0A0B4J1R7 106 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 PGPA6NDG6 321 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 KLLNB2CW77 178 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 GGTLC3B5MD39 225 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 DIRC3C9JPN6 131 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 TAAR5O14804 337 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 JTBO76095 146 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 MIFP14174 115 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 NKX2-5P52952 324 aaPredicted RBP6.58□□□□□ -1.36
VPS35-206ENST00000565228 BTN1A1Q13410 526 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 PMS2P11Q13670 270 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 C12orf74Q32Q52 190 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 C9orf47Q6ZRZ4 202 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 S100A7AQ86SG5 101 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 GNPNAT1Q96EK6 184 aaPredicted RBP6.58□□□□□ -1.36
VPS35-206ENST00000565228 SGK494Q96LW2 274 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 RNF24Q9Y225 148 aa6.58□□□□□ -1.36
VPS35-206ENST00000565228 HECTD4Q9Y4D8 3996 aa6.57□□□□□ -1.36
VPS35-206ENST00000565228 A0A0D9SG52 128 aa6.57□□□□□ -1.36
VPS35-206ENST00000565228 A0A1W2PPV4 95 aa6.57□□□□□ -1.36
VPS35-206ENST00000565228 ZNF324O75467 553 aaPredicted RBP6.57□□□□□ -1.36
VPS35-206ENST00000565228 IGLV2-11P01706 119 aa6.57□□□□□ -1.36
VPS35-206ENST00000565228 CRISP2P16562 243 aa6.57□□□□□ -1.36
VPS35-206ENST00000565228 CDKN1BP46527 198 aa6.57□□□□□ -1.36
VPS35-206ENST00000565228 NUTF2P61970 127 aaKnown RBP6.57□□□□□ -1.36
VPS35-206ENST00000565228 LINC01559Q495D7 138 aa6.57□□□□□ -1.36
VPS35-206ENST00000565228 PQLC2Q6ZP29 291 aa6.57□□□□□ -1.36
VPS35-206ENST00000565228 Q6ZTC4 211 aa6.57□□□□□ -1.36
VPS35-206ENST00000565228 ZNF471Q9BX82 626 aaPredicted RBP6.57□□□□□ -1.36
VPS35-206ENST00000565228 ZNF492Q9P255 531 aa6.57□□□□□ -1.36
VPS35-206ENST00000565228 CTXND1A0A1B0GTU2 59 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 INSP01308 110 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 EMP1P54849 157 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 TAS2R45P59539 299 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 CCL20P78556 96 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 AKAP14Q86UN6 197 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 LYPD1Q8N2G4 141 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 OR10J6PQ8NGY7 276 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 STOML3Q8TAV4 291 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 TMED6Q8WW62 240 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 HYLS1Q96M11 299 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 LINC00479Q96M42 142 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 ODF3Q96PU9 254 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 C1QTNF4Q9BXJ3 329 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 ACTR3CQ9C0K3 210 aaPredicted RBP6.56□□□□□ -1.36
VPS35-206ENST00000565228 OTORQ9NRC9 128 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 TP53TG3Q9ULZ0 132 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 PRELID1Q9Y255 219 aa6.56□□□□□ -1.36
VPS35-206ENST00000565228 TRAV12-3A0A0B4J271 114 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 LOC102723971A0A1B0GUV8 181 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 MBP02144 154 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 SEC11BP0C7V7 166 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 ZNF80P51504 273 aaPredicted RBP6.55□□□□□ -1.36
VPS35-206ENST00000565228 UBE2G2P60604 165 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 LCE2CQ5TA81 110 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 FAM222AQ5U5X8 452 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 GOLT1AQ6ZVE7 132 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 C11orf45Q8TAV5 145 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 RNASE8Q8TDE3 154 aaKnown RBP6.55□□□□□ -1.36
VPS35-206ENST00000565228 PHLDA1Q8WV24 401 aaPredicted RBP6.55□□□□□ -1.36
VPS35-206ENST00000565228 MBD3L1Q8WWY6 194 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 LINC01587Q99440 93 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 AAMDCQ9H7C9 122 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 DKK2Q9UBU2 259 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 RPH3ALQ9UNE2 315 aa6.55□□□□□ -1.36
VPS35-206ENST00000565228 A0A1B0GV50 99 aa6.54□□□□□ -1.36
VPS35-206ENST00000565228 KANTRA0A1W2PQU2 76 aa6.54□□□□□ -1.36
VPS35-206ENST00000565228 MAP1LC3B2A6NCE7 125 aa6.54□□□□□ -1.36
VPS35-206ENST00000565228 FAM74A7A6NL05 159 aa6.54□□□□□ -1.36
VPS35-206ENST00000565228 CXorf1O96002 111 aa6.54□□□□□ -1.36
VPS35-206ENST00000565228 SUMO1P63165 101 aaKnown RBP6.54□□□□□ -1.36
VPS35-206ENST00000565228 FAM74A1Q5RGS3 127 aa6.54□□□□□ -1.36
VPS35-206ENST00000565228 AKR1C8PQ5T2L2 129 aa6.54□□□□□ -1.36
VPS35-206ENST00000565228 CEMP1Q6PRD7 247 aaPredicted RBP6.54□□□□□ -1.36
VPS35-206ENST00000565228 CCDC28AQ8IWP9 274 aa6.54□□□□□ -1.36
VPS35-206ENST00000565228 C11orf72Q8NBR9 251 aa6.54□□□□□ -1.36
VPS35-206ENST00000565228 LINC00477Q96M19 166 aa6.54□□□□□ -1.36
VPS35-206ENST00000565228 C8orf49Q96NF6 230 aa6.54□□□□□ -1.36
VPS35-206ENST00000565228 MAP1LC3BQ9GZQ8 125 aa6.54□□□□□ -1.36
VPS35-206ENST00000565228 GOLT1BQ9Y3E0 138 aa6.54□□□□□ -1.36
VPS35-206ENST00000565228 TRAV34A0A0B4J273 112 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 C7orf71A4D174 169 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 RBAKDNA6NC62 111 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 CXorf65A6NEN9 183 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 SMIM9A6NGZ8 99 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 F6UZH7 168 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 AMBPP02760 352 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 TCRAP04437 139 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 SLC25A5P05141 298 aaKnown RBP6.53□□□□□ -1.36
VPS35-206ENST00000565228 HTN1P15515 57 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 RNASE4P34096 147 aaKnown RBP6.53□□□□□ -1.36
VPS35-206ENST00000565228 ATP5G3P48201 142 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 ZNF138P52744 262 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 TAS2R60P59551 318 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms