RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CFAP46Q8IYW2 2715 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 UBR5O95071 2799 aaPredicted RBP1.35□□□□□ -2.19
SCFD1-221ENST00000556534 KCPQ6ZWJ8 1503 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 IQGAP2Q13576 1575 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 RGPD3A6NKT7 1758 aaPredicted RBP1.34□□□□□ -2.19
SCFD1-221ENST00000556534 RGPD4Q7Z3J3 1758 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 FBN2P35556 2912 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 HFM1A2PYH4 1435 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 TRAV14DV4A0A0A6YYC5 116 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 TRDV1A0A1B0GX56 115 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 A8MWV9 139 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 F8W036 122 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 TMBIM6P55061 237 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 RTL8BQ17RB0 113 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 EIF5AL1Q6IS14 154 aaKnown RBP1.34□□□□□ -2.19
SCFD1-221ENST00000556534 PRR15Q8IV56 129 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 PPTC7Q8NI37 304 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 GRPEL2Q8TAA5 225 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 ADAT1Q9BUB4 502 aaKnown RBP1.34□□□□□ -2.19
SCFD1-221ENST00000556534 C14orf132Q9NPU4 83 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 GOLGA3Q08378 1498 aa1.34□□□□□ -2.19
SCFD1-221ENST00000556534 MYO9AB2RTY4 2548 aa1.34□□□□□ -2.2
SCFD1-221ENST00000556534 MARF1Q9Y4F3 1742 aaKnown RBP1.34□□□□□ -2.2
SCFD1-221ENST00000556534 ITPR1Q14643 2758 aa1.34□□□□□ -2.2
SCFD1-221ENST00000556534 PIEZO2Q9H5I5 2752 aa1.34□□□□□ -2.2
SCFD1-221ENST00000556534 INTS1Q8N201 2190 aaKnown RBP1.34□□□□□ -2.2
SCFD1-221ENST00000556534 TMEM2Q9UHN6 1383 aa1.34□□□□□ -2.2
SCFD1-221ENST00000556534 ZFHX3Q15911 3703 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 EEA1Q15075 1411 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 FER1L6Q2WGJ9 1857 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 ALPK2Q86TB3 2170 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 PRORSD1PA6NEY8 169 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 PROSCO94903 275 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 IGLV1-51P01701 117 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 PHF5AQ7RTV0 110 aaKnown RBP1.33□□□□□ -2.2
SCFD1-221ENST00000556534 SFT2D1Q8WV19 159 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 ANP32BQ92688 251 aaKnown RBP1.33□□□□□ -2.2
SCFD1-221ENST00000556534 BORCS8Q96FH0 119 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 RETNLBQ9BQ08 111 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 LINC00467Q9BRT7 94 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 EFCAB11Q9BUY7 163 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 REG4Q9BYZ8 158 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 C6orf62Q9GZU0 229 aaPredicted RBP1.33□□□□□ -2.2
SCFD1-221ENST00000556534 LRTM1Q9HBL6 345 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 NUBP2Q9Y5Y2 271 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 PTPRZ1P23471 2315 aaPredicted RBP1.33□□□□□ -2.2
SCFD1-221ENST00000556534 SETD2Q9BYW2 2564 aaPredicted RBP1.33□□□□□ -2.2
SCFD1-221ENST00000556534 PHRF1Q9P1Y6 1649 aaKnown RBP1.33□□□□□ -2.2
SCFD1-221ENST00000556534 NBEAQ8NFP9 2946 aa1.33□□□□□ -2.2
SCFD1-221ENST00000556534 TNRC6CQ9HCJ0 1690 aaKnown RBP1.32□□□□□ -2.2
SCFD1-221ENST00000556534 MAP1BP46821 2468 aaKnown RBP1.32□□□□□ -2.2
SCFD1-221ENST00000556534 DMXL1Q9Y485 3027 aa1.32□□□□□ -2.2
SCFD1-221ENST00000556534 CNOT1A5YKK6 2376 aaKnown RBP1.32□□□□□ -2.2
SCFD1-221ENST00000556534 BRS3P32247 399 aa1.32□□□□□ -2.2
SCFD1-221ENST00000556534 MYL5Q02045 173 aa1.32□□□□□ -2.2
SCFD1-221ENST00000556534 PLCXD2Q0VAA5 305 aa1.32□□□□□ -2.2
SCFD1-221ENST00000556534 SURF2Q15527 256 aaPredicted RBP1.32□□□□□ -2.2
SCFD1-221ENST00000556534 TMEM128Q5BJH2 165 aa1.32□□□□□ -2.2
SCFD1-221ENST00000556534 HRCT1Q6UXD1 115 aa1.32□□□□□ -2.2
SCFD1-221ENST00000556534 TOMM20LQ6UXN7 152 aa1.32□□□□□ -2.2
SCFD1-221ENST00000556534 ST6GALNAC3Q8NDV1 305 aa1.32□□□□□ -2.2
SCFD1-221ENST00000556534 THEM6Q8WUY1 208 aa1.32□□□□□ -2.2
SCFD1-221ENST00000556534 OR5AC2Q9NZP5 309 aa1.32□□□□□ -2.2
SCFD1-221ENST00000556534 SOX21Q9Y651 276 aaPredicted RBP1.32□□□□□ -2.2
SCFD1-221ENST00000556534 CHCHD2Q9Y6H1 151 aaPredicted RBP1.32□□□□□ -2.2
SCFD1-221ENST00000556534 NRXN3Q9Y4C0 1643 aa1.32□□□□□ -2.2
SCFD1-221ENST00000556534 NWD2Q9ULI1 1742 aa1.32□□□□□ -2.2
SCFD1-221ENST00000556534 TENM4Q6N022 2769 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 ZFC3H1O60293 1989 aaKnown RBP1.31□□□□□ -2.2
SCFD1-221ENST00000556534 MCM3APO60318 1980 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 TNRC6AQ8NDV7 1962 aaKnown RBP1.31□□□□□ -2.2
SCFD1-221ENST00000556534 KIAA1549Q9HCM3 1950 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 LRRC37A3O60309 1634 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 IGKV2D-26A0A0A0MRZ7 120 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 TRAV5A0A0B4J249 113 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 E7EQ34 232 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 MRPS14O60783 128 aaKnown RBP1.31□□□□□ -2.2
SCFD1-221ENST00000556534 RPL7P18124 248 aaKnown RBP1.31□□□□□ -2.2
SCFD1-221ENST00000556534 S100GP29377 79 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 POLR2HP52434 150 aaKnown RBP1.31□□□□□ -2.2
SCFD1-221ENST00000556534 HBBP68871 147 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 CDK5R1Q15078 307 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 RPS19BP1Q86WX3 136 aaKnown RBP1.31□□□□□ -2.2
SCFD1-221ENST00000556534 ANGPTL5Q86XS5 388 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 Q8N814 137 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 OR2T35Q8NGX2 323 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 TEX47Q8TBZ9 253 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 POP5Q969H6 163 aaKnown RBP1.31□□□□□ -2.2
SCFD1-221ENST00000556534 CCDC32Q9BV29 185 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 OR2H1Q9GZK4 316 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 TAF9BQ9HBM6 251 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 LAMTOR3Q9UHA4 124 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 LOC400499M0QZD8 3231 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 UBR1Q8IWV7 1749 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 KIDINS220Q9ULH0 1771 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 BCL9O00512 1426 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 C1orf167Q5SNV9 1468 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 VPS13AQ96RL7 3174 aa1.31□□□□□ -2.2
SCFD1-221ENST00000556534 NAV3Q8IVL0 2385 aa1.3□□□□□ -2.2
SCFD1-221ENST00000556534 LAMA5O15230 3695 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 131.6 ms