RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 SMIM3Q9BZL3 60 aa7.31□□□□□ -1.24
CCDC88C-206ENST00000553437 MED9Q9NWA0 146 aa7.31□□□□□ -1.24
CCDC88C-206ENST00000553437 TEX48A0A1B0GUV7 120 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 NPIPB6E9PJ23 425 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 M0R3E3 92 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 ARPC5O15511 151 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 PDE6HQ13956 83 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 CCDC28AQ8IWP9 274 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 TMEM256Q8N2U0 113 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 OR10J6PQ8NGY7 276 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 FXYD5Q96DB9 178 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 LINC01587Q99440 93 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 KRTAP4-12Q9BQ66 201 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 NIPSNAP3BQ9BS92 247 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 KCNIP2Q9NS61 270 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 PPP1R14DQ9NXH3 145 aa7.3□□□□□ -1.24
CCDC88C-206ENST00000553437 C17orf112F2Z3M2 114 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 NBEAP1P0C6P0 100 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 TAS2R60P59551 318 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 ZNF345Q14585 488 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 TOR2AQ5JU69 321 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 GFI1BQ5VTD9 330 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 SLC51BQ86UW2 128 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 EXOC3-AS1Q8N2X6 119 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 BLNKQ8WV28 456 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 ZNF503Q96F45 646 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 ODF3Q96PU9 254 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 MRPL32Q9BYC8 188 aaKnown RBP7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 OR51M1Q9H341 326 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 FUT9Q9Y231 359 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 PRELID1Q9Y255 219 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 TIMM9Q9Y5J7 89 aa7.29□□□□□ -1.24
CCDC88C-206ENST00000553437 LYRM9A8MSI8 78 aa7.28□□□□□ -1.24
CCDC88C-206ENST00000553437 H7BYZ3 331 aa7.28□□□□□ -1.24
CCDC88C-206ENST00000553437 IFNA5P01569 189 aa7.28□□□□□ -1.24
CCDC88C-206ENST00000553437 ERCC8Q13216 396 aa7.28□□□□□ -1.24
CCDC88C-206ENST00000553437 FFAR4Q5NUL3 377 aa7.28□□□□□ -1.24
CCDC88C-206ENST00000553437 KCNRGQ8N5I3 272 aa7.28□□□□□ -1.24
CCDC88C-206ENST00000553437 SCGB1C1Q8TD33 95 aa7.28□□□□□ -1.24
CCDC88C-206ENST00000553437 RNF141Q8WVD5 230 aa7.28□□□□□ -1.24
CCDC88C-206ENST00000553437 FAM19A4Q96LR4 140 aa7.28□□□□□ -1.24
CCDC88C-206ENST00000553437 C20orf144Q9BQM9 153 aa7.28□□□□□ -1.24
CCDC88C-206ENST00000553437 PAXXQ9BUH6 204 aa7.28□□□□□ -1.24
CCDC88C-206ENST00000553437 AGPAT4-IT1Q9H0P7 198 aa7.28□□□□□ -1.24
CCDC88C-206ENST00000553437 KANTRA0A1W2PQU2 76 aa7.27□□□□□ -1.25
CCDC88C-206ENST00000553437 BCL2L11O43521 198 aa7.27□□□□□ -1.25
CCDC88C-206ENST00000553437 OR10J4P0C629 311 aa7.27□□□□□ -1.25
CCDC88C-206ENST00000553437 LEPP41159 167 aa7.27□□□□□ -1.25
CCDC88C-206ENST00000553437 DAD1P61803 113 aa7.27□□□□□ -1.25
CCDC88C-206ENST00000553437 ICAM4Q14773 271 aa7.27□□□□□ -1.25
CCDC88C-206ENST00000553437 RNASE8Q8TDE3 154 aaKnown RBP7.27□□□□□ -1.25
CCDC88C-206ENST00000553437 PHYHIPLQ96FC7 376 aa7.27□□□□□ -1.25
CCDC88C-206ENST00000553437 FAM210BQ96KR6 192 aa7.27□□□□□ -1.25
CCDC88C-206ENST00000553437 NDUFAF3Q9BU61 184 aa7.27□□□□□ -1.25
CCDC88C-206ENST00000553437 TNFSF18Q9UNG2 199 aa7.27□□□□□ -1.25
CCDC88C-206ENST00000553437 KLLNB2CW77 178 aa7.26□□□□□ -1.25
CCDC88C-206ENST00000553437 EIF3GO75821 320 aaKnown RBP eCLIP7.26□□□□□ -1.25
CCDC88C-206ENST00000553437 NMBP08949 121 aa7.26□□□□□ -1.25
CCDC88C-206ENST00000553437 HTN1P15515 57 aa7.26□□□□□ -1.25
CCDC88C-206ENST00000553437 ZNF493Q6ZR52 646 aa7.26□□□□□ -1.25
CCDC88C-206ENST00000553437 C9orf47Q6ZRZ4 202 aa7.26□□□□□ -1.25
CCDC88C-206ENST00000553437 C16orf74Q96GX8 76 aa7.26□□□□□ -1.25
CCDC88C-206ENST00000553437 LINC00477Q96M19 166 aa7.26□□□□□ -1.25
CCDC88C-206ENST00000553437 AQP10Q96PS8 301 aa7.26□□□□□ -1.25
CCDC88C-206ENST00000553437 AAMDCQ9H7C9 122 aa7.26□□□□□ -1.25
CCDC88C-206ENST00000553437 DNAH2Q9P225 4427 aa7.26□□□□□ -1.25
CCDC88C-206ENST00000553437 IGKV2-40A0A087WW87 121 aaPredicted RBP7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 TRAV12-3A0A0B4J271 114 aa7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 J3KRW8 73 aa7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 OR7C2O60412 319 aa7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 ZNF324O75467 553 aaPredicted RBP7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 IGKV2D-40P01614 121 aaPredicted RBP7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 SLC25A5P05141 298 aaKnown RBP7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 HTN3P15516 51 aa7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 CRISP2P16562 243 aa7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 M6PRP20645 277 aa7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 FAM122CQ6P4D5 195 aa7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 ALKAL2Q6UX46 152 aa7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 LYPD1Q8N2G4 141 aa7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 TMEM263Q8WUH6 116 aaKnown RBP7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 VGLL1Q99990 258 aa7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 TIMM8BQ9Y5J9 83 aaPredicted RBP7.25□□□□□ -1.25
CCDC88C-206ENST00000553437 C7orf71A4D174 169 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 RNF222A6NCQ9 220 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 CBY3A6NI87 242 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 DEFB130BP0DP73 79 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 DEFB130AP0DP74 79 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 TAS2R45P59539 299 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 RAB2AP61019 212 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 RANP62826 216 aaKnown RBP7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 UBE2L3P68036 154 aaKnown RBP7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 BTN1A1Q13410 526 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 ACOT6Q3I5F7 207 aaPredicted RBP7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 KHDC3LQ587J8 217 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 TMEM88Q6PEY1 159 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 EIF4E3Q8N5X7 224 aaKnown RBP7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 ZFAND2AQ8N6M9 145 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 LINC00612Q8N6U2 182 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 POM121L12Q8N7R1 296 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 INO80EQ8NBZ0 244 aaPredicted RBP7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms