RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 TRAV5A0A0B4J249 113 aa7.87□□□□□ -1.15
VPS28-214ENST00000531032 NPIPB6E9PJ23 425 aa7.87□□□□□ -1.15
VPS28-214ENST00000531032 C17orf112F2Z3M2 114 aa7.87□□□□□ -1.15
VPS28-214ENST00000531032 H3BNG1 76 aa7.87□□□□□ -1.15
VPS28-214ENST00000531032 CT45A10P0DMU9 189 aa7.87□□□□□ -1.15
VPS28-214ENST00000531032 NHLH2Q02577 135 aa7.87□□□□□ -1.15
VPS28-214ENST00000531032 TTC32Q5I0X7 151 aa7.87□□□□□ -1.15
VPS28-214ENST00000531032 Q9H3A6 140 aa7.87□□□□□ -1.15
VPS28-214ENST00000531032 A0A0J9YY99 117 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 A0A1W2PPQ1 181 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 GAGE12BA1L429 117 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 SNURFLB1AK76 121 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 ZNF253O75346 499 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 GAGE7O76087 117 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 GAGE12FP0CL80 117 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 GAGE12GP0CL81 117 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 GAGE12IP0CL82 117 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 LEPP41159 167 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 H2BFSP57053 126 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 DAZ2Q13117 558 aaKnown RBP7.86□□□□□ -1.15
VPS28-214ENST00000531032 CHAC2Q8WUX2 184 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 PYGO2Q9BRQ0 406 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 TIMM9Q9Y5J7 89 aa7.86□□□□□ -1.15
VPS28-214ENST00000531032 TRAV12-3A0A0B4J271 114 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 H0YIZ8 118 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 J3KRW8 73 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 PTTG1O95997 202 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 IFNA5P01569 189 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 BTF3P20290 206 aaKnown RBP7.85□□□□□ -1.15
VPS28-214ENST00000531032 ESRGQ1W209 222 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 SPATA12Q7Z6I5 190 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 MAPKAPK5-AS1Q8N8E1 139 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 SCGB1C1Q8TD33 95 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 BLNKQ8WV28 456 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 MRPL53Q96EL3 112 aaKnown RBP7.85□□□□□ -1.15
VPS28-214ENST00000531032 ATP5SQ99766 215 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 WDR61Q9GZS3 305 aaKnown RBP7.85□□□□□ -1.15
VPS28-214ENST00000531032 TMPRSS5Q9H3S3 457 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 AAMDCQ9H7C9 122 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 ZNF586Q9NXT0 402 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 MBD2Q9UBB5 411 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 MRPS16Q9Y3D3 137 aaKnown RBP7.85□□□□□ -1.15
VPS28-214ENST00000531032 HSPB11Q9Y547 144 aa7.85□□□□□ -1.15
VPS28-214ENST00000531032 MPC2O95563 127 aa7.84□□□□□ -1.15
VPS28-214ENST00000531032 PYYP10082 97 aa7.84□□□□□ -1.15
VPS28-214ENST00000531032 HIST1H1EP10412 219 aaKnown RBP7.84□□□□□ -1.15
VPS28-214ENST00000531032 GCSAMLQ5JQS6 135 aa7.84□□□□□ -1.15
VPS28-214ENST00000531032 Q6ZTI0 123 aa7.84□□□□□ -1.15
VPS28-214ENST00000531032 C11orf72Q8NBR9 251 aa7.84□□□□□ -1.15
VPS28-214ENST00000531032 C18orf15Q96N68 181 aa7.84□□□□□ -1.15
VPS28-214ENST00000531032 MRPL32Q9BYC8 188 aaKnown RBP7.84□□□□□ -1.15
VPS28-214ENST00000531032 SMIM3Q9BZL3 60 aa7.84□□□□□ -1.15
VPS28-214ENST00000531032 TMEM14CQ9P0S9 112 aa7.84□□□□□ -1.15
VPS28-214ENST00000531032 PRELID1Q9Y255 219 aa7.84□□□□□ -1.15
VPS28-214ENST00000531032 TRBV19A0A075B6N1 114 aa7.83□□□□□ -1.16
VPS28-214ENST00000531032 KLLNB2CW77 178 aa7.83□□□□□ -1.16
VPS28-214ENST00000531032 OR7C2O60412 319 aa7.83□□□□□ -1.16
VPS28-214ENST00000531032 SLC25A5P05141 298 aaKnown RBP7.83□□□□□ -1.16
VPS28-214ENST00000531032 RPL12P30050 165 aaKnown RBP7.83□□□□□ -1.16
VPS28-214ENST00000531032 PDE6HQ13956 83 aa7.83□□□□□ -1.16
VPS28-214ENST00000531032 MIR17HGQ75NE6 70 aa7.83□□□□□ -1.16
VPS28-214ENST00000531032 Q8N1X5 172 aa7.83□□□□□ -1.16
VPS28-214ENST00000531032 ZNF680Q8NEM1 530 aa7.83□□□□□ -1.16
VPS28-214ENST00000531032 VSIG2Q96IQ7 327 aa7.83□□□□□ -1.16
VPS28-214ENST00000531032 FAM19A4Q96LR4 140 aa7.83□□□□□ -1.16
VPS28-214ENST00000531032 LINC00467Q9BRT7 94 aa7.83□□□□□ -1.16
VPS28-214ENST00000531032 ALG5Q9Y673 324 aa7.83□□□□□ -1.16
VPS28-214ENST00000531032 C7orf71A4D174 169 aa7.82□□□□□ -1.16
VPS28-214ENST00000531032 M0R3E3 92 aa7.82□□□□□ -1.16
VPS28-214ENST00000531032 ZNF324O75467 553 aaPredicted RBP7.82□□□□□ -1.16
VPS28-214ENST00000531032 NDUFB4O95168 129 aa7.82□□□□□ -1.16
VPS28-214ENST00000531032 KRTAP10-2P60368 255 aa7.82□□□□□ -1.16
VPS28-214ENST00000531032 ERCC8Q13216 396 aa7.82□□□□□ -1.16
VPS28-214ENST00000531032 RGS21Q2M5E4 152 aa7.82□□□□□ -1.16
VPS28-214ENST00000531032 ANXA2RQ3ZCQ2 193 aa7.82□□□□□ -1.16
VPS28-214ENST00000531032 FFAR4Q5NUL3 377 aa7.82□□□□□ -1.16
VPS28-214ENST00000531032 PAXXQ9BUH6 204 aa7.82□□□□□ -1.16
VPS28-214ENST00000531032 SLC25A2Q9BXI2 301 aa7.82□□□□□ -1.16
VPS28-214ENST00000531032 OR51M1Q9H341 326 aa7.82□□□□□ -1.16
VPS28-214ENST00000531032 GSN-AS1Q9NRJ2 163 aa7.82□□□□□ -1.16
VPS28-214ENST00000531032 FUT9Q9Y231 359 aa7.82□□□□□ -1.16
VPS28-214ENST00000531032 TRGV2A0A075B6R0 118 aa7.81□□□□□ -1.16
VPS28-214ENST00000531032 A0A096LPF7 62 aa7.81□□□□□ -1.16
VPS28-214ENST00000531032 TAS2R45P59539 299 aa7.81□□□□□ -1.16
VPS28-214ENST00000531032 UBE2L3P68036 154 aaKnown RBP7.81□□□□□ -1.16
VPS28-214ENST00000531032 CD300CQ08708 224 aa7.81□□□□□ -1.16
VPS28-214ENST00000531032 FAM122CQ6P4D5 195 aa7.81□□□□□ -1.16
VPS28-214ENST00000531032 LINC00477Q96M19 166 aa7.81□□□□□ -1.16
VPS28-214ENST00000531032 MED28Q9H204 178 aa7.81□□□□□ -1.16
VPS28-214ENST00000531032 DNAH5Q8TE73 4624 aa7.81□□□□□ -1.16
VPS28-214ENST00000531032 APOBP04114 4563 aaKnown RBP7.81□□□□□ -1.16
VPS28-214ENST00000531032 TRGV1A0A0A0MS02 117 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 SPINK4O60575 86 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 NMBP08949 121 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 OR10J4P0C629 311 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 NBEAP1P0C6P0 100 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 CRISP2P16562 243 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 CSN1S1P47710 185 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 TCL1AP56279 114 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 LINC00315P59091 139 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 193.8 ms