RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 EPG5Q9HCE0 2579 aa-0.11□□□□□ -2.43
SMC4-227ENST00000497984 DNHD1Q96M86 4753 aa-0.11□□□□□ -2.43
SMC4-227ENST00000497984 STARD9Q9P2P6 4700 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 UHRF1BP1Q6BDS2 1440 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 CD109Q6YHK3 1445 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 NF1P21359 2839 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 KIF1BO60333 1816 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 WDR87Q6ZQQ6 2873 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 PRRC2CQ9Y520 2896 aaKnown RBP-0.12□□□□□ -2.43
SMC4-227ENST00000497984 A6NN06 94 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 GPR31O00270 319 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 CSN2P05814 226 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 HACD4Q5VWC8 232 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 CASC2Q6XLA1 102 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 C10orf111Q8N326 155 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 MALSU1Q96EH3 234 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 TAF9BQ9HBM6 251 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 SSR3Q9UNL2 185 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 IGSF10Q6WRI0 2623 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 OBSL1O75147 1896 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 ACACBO00763 2458 aa-0.12□□□□□ -2.43
SMC4-227ENST00000497984 SIP14410 1827 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 ITPR2Q14571 2701 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 CFAP46Q8IYW2 2715 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 LAMA3Q16787 3333 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 NCAPD3P42695 1498 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 MFSD11O43934 449 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 CST7O76096 145 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 APOA2P02652 100 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 S100A6P06703 90 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 CAV3P56539 151 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 POU6F1Q14863 301 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 TMED2Q15363 201 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 KRTAP6-1Q3LI64 71 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 GLYATL3Q5SZD4 288 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 FKBP1CQ5VVH2 108 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 C10orf99Q6UWK7 81 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 CEP19Q96LK0 163 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 CARD19Q96LW7 228 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 OR2H1Q9GZK4 316 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 NAT8BQ9UHF3 227 aa-0.13□□□□□ -2.43
SMC4-227ENST00000497984 LAMA2P24043 3122 aaKnown RBP-0.13□□□□□ -2.43
SMC4-227ENST00000497984 NIPBLQ6KC79 2804 aaeCLIP-0.13□□□□□ -2.438e-8■■■■■ 47
SMC4-227ENST00000497984 GCN1Q92616 2671 aaKnown RBP-0.13□□□□□ -2.43
SMC4-227ENST00000497984 PLXNA4Q9HCM2 1894 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 ASCC3Q8N3C0 2202 aaKnown RBP-0.14□□□□□ -2.43
SMC4-227ENST00000497984 TEX15Q9BXT5 2789 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 IGHV3-30P01768 117 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 IGHV3-30-5P0DP03 117 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 RPL35P42766 123 aaKnown RBP-0.14□□□□□ -2.43
SMC4-227ENST00000497984 MRPS25P82663 173 aaKnown RBP-0.14□□□□□ -2.43
SMC4-227ENST00000497984 NEDD8Q15843 81 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 LTC4SQ16873 150 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 LYG2Q86SG7 212 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 MNS1Q8NEH6 495 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 NUP35Q8NFH5 326 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 CCL4L1Q8NHW4 92 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 GINS3Q9BRX5 216 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 PBDC1Q9BVG4 233 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 LPAR5Q9H1C0 372 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 CEP295Q9C0D2 2601 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 CAMSAP1Q5T5Y3 1602 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 DMBT1Q9UGM3 2413 aaPredicted RBP-0.14□□□□□ -2.43
SMC4-227ENST00000497984 SCN8AQ9UQD0 1980 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 TNCP24821 2201 aa-0.14□□□□□ -2.43
SMC4-227ENST00000497984 LRP1Q07954 4544 aaKnown RBP-0.14□□□□□ -2.43
SMC4-227ENST00000497984 MAP1BP46821 2468 aaKnown RBP-0.14□□□□□ -2.43
SMC4-227ENST00000497984 RTL9Q8NET4 1388 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 SULT1C4O75897 302 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 MT-ND6P03923 174 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 RPL37P61927 97 aaKnown RBP-0.15□□□□□ -2.43
SMC4-227ENST00000497984 XAF1Q6GPH4 301 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 LINC00208Q96KT6 92 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 OR4C12Q96R67 309 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 EFCAB11Q9BUY7 163 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 RTL8AQ9BWD3 113 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 OTORQ9NRC9 128 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 TPRKBQ9Y3C4 175 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 LRRK2Q5S007 2527 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 HSPG2P98160 4391 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 CELSR1Q9NYQ6 3014 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 LRP1BQ9NZR2 4599 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 MAP1AP78559 2803 aaPredicted RBP-0.15□□□□□ -2.43
SMC4-227ENST00000497984 NUP98P52948 1817 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 CCDC168Q8NDH2 2452 aa-0.15□□□□□ -2.43
SMC4-227ENST00000497984 CAMSAP2Q08AD1 1489 aa-0.16□□□□□ -2.43
SMC4-227ENST00000497984 TACC2O95359 2948 aa-0.16□□□□□ -2.43
SMC4-227ENST00000497984 E2F6O75461 281 aa-0.16□□□□□ -2.44
SMC4-227ENST00000497984 IFNA1P01562 189 aa-0.16□□□□□ -2.44
SMC4-227ENST00000497984 FABP4P15090 132 aa-0.16□□□□□ -2.44
SMC4-227ENST00000497984 RPS3P23396 243 aaKnown RBP eCLIP-0.16□□□□□ -2.447e-64■■■■■ 337.8
SMC4-227ENST00000497984 PPP1R2P41236 205 aa-0.16□□□□□ -2.44
SMC4-227ENST00000497984 RTL8BQ17RB0 113 aa-0.16□□□□□ -2.44
SMC4-227ENST00000497984 CSAG1Q6PB30 78 aa-0.16□□□□□ -2.44
SMC4-227ENST00000497984 SMIM20Q8N5G0 67 aa-0.16□□□□□ -2.44
SMC4-227ENST00000497984 OR13C6PQ8NH95 151 aa-0.16□□□□□ -2.44
SMC4-227ENST00000497984 CHMP6Q96FZ7 201 aa-0.16□□□□□ -2.44
SMC4-227ENST00000497984 PIEZO2Q9H5I5 2752 aa-0.16□□□□□ -2.44
SMC4-227ENST00000497984 NBEAQ8NFP9 2946 aa-0.16□□□□□ -2.44
SMC4-227ENST00000497984 FAT2Q9NYQ8 4349 aa-0.16□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms