RNA–Protein interactions for RNA: ENST00000488765.1

MCF2L-229, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 3,205 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-229ENST00000488765 MRPL20Q9BYC9 149 aaKnown RBP12.78□□□□□ -0.36
MCF2L-229ENST00000488765 SPRR3Q9UBC9 169 aa12.78□□□□□ -0.36
MCF2L-229ENST00000488765 HOXA3O43365 443 aaPredicted RBP12.78□□□□□ -0.36
MCF2L-229ENST00000488765 ENSAO43768 121 aaKnown RBP12.78□□□□□ -0.36
MCF2L-229ENST00000488765 CRLF1O75462 422 aa12.78□□□□□ -0.36
MCF2L-229ENST00000488765 CXXC4Q9H2H0 198 aa12.78□□□□□ -0.36
MCF2L-229ENST00000488765 IGKV3D-15A0A087WSY6 115 aa12.77□□□□□ -0.36
MCF2L-229ENST00000488765 H7C2G1 150 aa12.77□□□□□ -0.36
MCF2L-229ENST00000488765 SPRY3O43610 288 aa12.77□□□□□ -0.36
MCF2L-229ENST00000488765 EFNA4P52798 201 aa12.77□□□□□ -0.36
MCF2L-229ENST00000488765 C17orf58Q2M2W7 97 aa12.77□□□□□ -0.36
MCF2L-229ENST00000488765 MORN3Q6PF18 240 aaPredicted RBP12.77□□□□□ -0.36
MCF2L-229ENST00000488765 RITA1Q96K30 269 aa12.77□□□□□ -0.36
MCF2L-229ENST00000488765 IL4P05112 153 aa12.77□□□□□ -0.37
MCF2L-229ENST00000488765 DLX1P56177 255 aa12.77□□□□□ -0.37
MCF2L-229ENST00000488765 SRSF9Q13242 221 aaKnown RBP eCLIP12.77□□□□□ -0.37
MCF2L-229ENST00000488765 SPRY4Q9C004 299 aa12.77□□□□□ -0.37
MCF2L-229ENST00000488765 TRAV4A0A0B4J268 109 aa12.77□□□□□ -0.37
MCF2L-229ENST00000488765 Q8TAT8 98 aa12.77□□□□□ -0.37
MCF2L-229ENST00000488765 CFAP126Q5VTH2 177 aa12.76□□□□□ -0.37
MCF2L-229ENST00000488765 OR1L8Q8NGR8 309 aa12.76□□□□□ -0.37
MCF2L-229ENST00000488765 IQCF6A8MYZ5 107 aa12.76□□□□□ -0.37
MCF2L-229ENST00000488765 GP9P14770 177 aa12.76□□□□□ -0.37
MCF2L-229ENST00000488765 KIR2DS2P43631 304 aa12.76□□□□□ -0.37
MCF2L-229ENST00000488765 TRAV26-2A0A0B4J265 109 aa12.75□□□□□ -0.37
MCF2L-229ENST00000488765 CRYGCP07315 174 aa12.75□□□□□ -0.37
MCF2L-229ENST00000488765 NDUFA4L2Q9NRX3 87 aa12.75□□□□□ -0.37
MCF2L-229ENST00000488765 TNFRSF13BO14836 293 aaPredicted RBP12.75□□□□□ -0.37
MCF2L-229ENST00000488765 DPM2O94777 84 aa12.75□□□□□ -0.37
MCF2L-229ENST00000488765 PLA2G2CQ5R387 149 aa12.75□□□□□ -0.37
MCF2L-229ENST00000488765 Q6ZQT7 251 aa12.75□□□□□ -0.37
MCF2L-229ENST00000488765 RPEQ96AT9 228 aa12.75□□□□□ -0.37
MCF2L-229ENST00000488765 CCL13Q99616 98 aa12.75□□□□□ -0.37
MCF2L-229ENST00000488765 CITED1Q99966 193 aa12.75□□□□□ -0.37
MCF2L-229ENST00000488765 TMEM133Q9H2Q1 129 aa12.75□□□□□ -0.37
MCF2L-229ENST00000488765 IGHV3OR16-8A0A075B7F1 116 aa12.74□□□□□ -0.37
MCF2L-229ENST00000488765 SCGB1C2P0DMR2 95 aa12.74□□□□□ -0.37
MCF2L-229ENST00000488765 CT45A10P0DMU9 189 aa12.74□□□□□ -0.37
MCF2L-229ENST00000488765 FAM216BQ8N7L0 139 aa12.74□□□□□ -0.37
MCF2L-229ENST00000488765 CGB1A6NKQ9 187 aa12.74□□□□□ -0.37
MCF2L-229ENST00000488765 FAM159AQ6UWV7 190 aa12.74□□□□□ -0.37
MCF2L-229ENST00000488765 TRAV8-2A0A0B4J237 113 aa12.73□□□□□ -0.37
MCF2L-229ENST00000488765 DLX4Q92988 240 aaPredicted RBP12.73□□□□□ -0.37
MCF2L-229ENST00000488765 HIGD1BQ9P298 99 aa12.73□□□□□ -0.37
MCF2L-229ENST00000488765 ASH1LQ9NR48 2969 aaKnown RBP12.73□□□□□ -0.37
MCF2L-229ENST00000488765 TTC32Q5I0X7 151 aa12.73□□□□□ -0.37
MCF2L-229ENST00000488765 SCGB1D4Q6XE38 83 aa12.73□□□□□ -0.37
MCF2L-229ENST00000488765 ZNF883P0CG24 379 aa12.73□□□□□ -0.37
MCF2L-229ENST00000488765 EMP1P54849 157 aa12.73□□□□□ -0.37
MCF2L-229ENST00000488765 PROCRQ9UNN8 238 aa12.73□□□□□ -0.37
MCF2L-229ENST00000488765 GAGE12JA6NER3 117 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 SPRY2O43597 315 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 GAGE7O76087 117 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 GAGE12FP0CL80 117 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 GAGE12GP0CL81 117 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 GAGE12IP0CL82 117 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 IGHV1-2P23083 117 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 GAGE4Q13068 117 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 KLHL30-AS1Q8NEE0 82 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 VKORC1Q9BQB6 163 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 IGKV2-40A0A087WW87 121 aaPredicted RBP12.72□□□□□ -0.37
MCF2L-229ENST00000488765 IGKV2D-40P01614 121 aaPredicted RBP12.72□□□□□ -0.37
MCF2L-229ENST00000488765 GAGE2BQ13066 116 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 GAGE2EQ4V326 116 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 PRR7Q8TB68 274 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 GAGE2DQ9UEU5 116 aa12.72□□□□□ -0.37
MCF2L-229ENST00000488765 A0A1W2PPI3 338 aa12.71□□□□□ -0.37
MCF2L-229ENST00000488765 ORM1P02763 201 aa12.71□□□□□ -0.37
MCF2L-229ENST00000488765 CCL3L1P16619 93 aa12.71□□□□□ -0.37
MCF2L-229ENST00000488765 PAX8Q06710 450 aa12.71□□□□□ -0.37
MCF2L-229ENST00000488765 J3KRW8 73 aa12.71□□□□□ -0.37
MCF2L-229ENST00000488765 ANKRD29Q8N6D5 301 aa12.71□□□□□ -0.37
MCF2L-229ENST00000488765 PPDPFQ9H3Y8 114 aa12.71□□□□□ -0.37
MCF2L-229ENST00000488765 PTPRQQ9UMZ3 2332 aa12.71□□□□□ -0.37
MCF2L-229ENST00000488765 MAP1LC3AQ9H492 121 aa12.71□□□□□ -0.38
MCF2L-229ENST00000488765 HIGD1AQ9Y241 93 aa12.71□□□□□ -0.38
MCF2L-229ENST00000488765 NCBP2LA6PVI3 153 aaKnown RBP12.7□□□□□ -0.38
MCF2L-229ENST00000488765 RAX2Q96IS3 184 aa12.7□□□□□ -0.38
MCF2L-229ENST00000488765 FBXL15Q9H469 300 aa12.7□□□□□ -0.38
MCF2L-229ENST00000488765 SH2D1AO60880 128 aa12.7□□□□□ -0.38
MCF2L-229ENST00000488765 TCL1BO95988 128 aa12.69□□□□□ -0.38
MCF2L-229ENST00000488765 CRIP2P52943 208 aaPredicted RBP12.69□□□□□ -0.38
MCF2L-229ENST00000488765 NDUFV3P56181 108 aaKnown RBP12.69□□□□□ -0.38
MCF2L-229ENST00000488765 MSMPQ1L6U9 139 aa12.69□□□□□ -0.38
MCF2L-229ENST00000488765 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.69□□□□□ -0.38
MCF2L-229ENST00000488765 SLC25A39Q9BZJ4 359 aaPredicted RBP12.69□□□□□ -0.38
MCF2L-229ENST00000488765 TNRC6BQ9UPQ9 1833 aaKnown RBP12.69□□□□□ -0.38
MCF2L-229ENST00000488765 TNFRSF6BO95407 300 aa12.69□□□□□ -0.38
MCF2L-229ENST00000488765 EGR2P11161 476 aaPredicted RBP12.69□□□□□ -0.38
MCF2L-229ENST00000488765 ARL3P36405 182 aa12.69□□□□□ -0.38
MCF2L-229ENST00000488765 ZCCHC24Q8N2G6 241 aaKnown RBP12.69□□□□□ -0.38
MCF2L-229ENST00000488765 OR10X1Q8NGY0 326 aa12.69□□□□□ -0.38
MCF2L-229ENST00000488765 PPDPFLQ8WWR9 84 aa12.69□□□□□ -0.38
MCF2L-229ENST00000488765 FAM110AQ9BQ89 295 aa12.69□□□□□ -0.38
MCF2L-229ENST00000488765 CUBNO60494 3623 aa12.69□□□□□ -0.38
MCF2L-229ENST00000488765 CNTFRP26992 372 aa12.69□□□□□ -0.38
MCF2L-229ENST00000488765 MDS2Q8NDY4 140 aa12.69□□□□□ -0.38
MCF2L-229ENST00000488765 OTORQ9NRC9 128 aa12.69□□□□□ -0.38
MCF2L-229ENST00000488765 LRBAP50851 2863 aa12.69□□□□□ -0.38
MCF2L-229ENST00000488765 ZNF688P0C7X2 276 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms