RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PPIFP30405 207 aaKnown RBP9.4□□□□□ -0.91
HDAC6-230ENST00000488543 GPR183P32249 361 aa9.4□□□□□ -0.91
HDAC6-230ENST00000488543 OR10J3Q5JRS4 329 aa9.4□□□□□ -0.91
HDAC6-230ENST00000488543 CITED2Q99967 270 aaPredicted RBP9.4□□□□□ -0.91
HDAC6-230ENST00000488543 CLEC5AQ9NY25 188 aa9.4□□□□□ -0.91
HDAC6-230ENST00000488543 SETD2Q9BYW2 2564 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-230ENST00000488543 RPLP1P05386 114 aaKnown RBP9.39□□□□□ -0.91
HDAC6-230ENST00000488543 UBE2G1P62253 170 aa9.39□□□□□ -0.91
HDAC6-230ENST00000488543 NIPBLQ6KC79 2804 aaeCLIP9.39□□□□□ -0.91
HDAC6-230ENST00000488543 BRI3O95415 125 aa9.39□□□□□ -0.91
HDAC6-230ENST00000488543 EEF1AKMT3Q96AZ1 226 aa9.39□□□□□ -0.91
HDAC6-230ENST00000488543 TMEM208Q9BTX3 173 aa9.39□□□□□ -0.91
HDAC6-230ENST00000488543 EPDR1Q9UM22 224 aa9.39□□□□□ -0.91
HDAC6-230ENST00000488543 NSD1Q96L73 2696 aaPredicted RBP9.38□□□□□ -0.91
HDAC6-230ENST00000488543 CLEC3BP05452 202 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 HIST1H1EP10412 219 aaKnown RBP9.38□□□□□ -0.91
HDAC6-230ENST00000488543 CTRLP40313 264 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 EBLN2Q6P2I7 272 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 CLEC19AQ6UXS0 136 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 PGLYRP4Q96LB8 373 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 ZFAND3Q9H8U3 227 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 ESM1Q9NQ30 184 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 F8P00451 2351 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 FAM223BA6NKX1 122 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 IGLC2P0DOY2 106 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 CFHR3Q02985 330 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 ATP5G2Q06055 141 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 LCNL1Q6ZST4 164 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 LINC00173Q6ZV60 143 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 FAM223AQ8IWN6 122 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 EXOC3-AS1Q8N2X6 119 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 GRAMD2BQ96HH9 432 aa9.38□□□□□ -0.91
HDAC6-230ENST00000488543 FN1P02751 2386 aaKnown RBP9.37□□□□□ -0.91
HDAC6-230ENST00000488543 TRBV7-1A0A0A6YYK4 115 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 CIDEAO60543 219 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 SCGB2A1O75556 95 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 C10orf99Q6UWK7 81 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 GTSF1Q8WW33 167 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 URB1-AS1Q96HZ7 61 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 MCRIP2Q9BUT9 160 aaKnown RBP9.37□□□□□ -0.91
HDAC6-230ENST00000488543 IGHV3-35A0A0C4DH35 117 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 M0R2Z0 102 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 HSBP1O75506 76 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 TRGV3P03979 118 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 ZNF138P52744 262 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 C17orf77Q96MU5 243 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 Q9H3A6 140 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 ZNF580Q9UK33 172 aa9.37□□□□□ -0.91
HDAC6-230ENST00000488543 TIMM8BQ9Y5J9 83 aaPredicted RBP9.37□□□□□ -0.91
HDAC6-230ENST00000488543 INAFM1C9JVW0 142 aa9.36□□□□□ -0.91
HDAC6-230ENST00000488543 H3BUA1 57 aa9.36□□□□□ -0.91
HDAC6-230ENST00000488543 RPL19P84098 196 aaKnown RBP9.36□□□□□ -0.91
HDAC6-230ENST00000488543 Q6ZN92 141 aa9.36□□□□□ -0.91
HDAC6-230ENST00000488543 BPIFA4PQ86YQ2 179 aa9.36□□□□□ -0.91
HDAC6-230ENST00000488543 STPG4Q8N801 248 aa9.36□□□□□ -0.91
HDAC6-230ENST00000488543 OR4B1Q8NGF8 309 aa9.36□□□□□ -0.91
HDAC6-230ENST00000488543 BORCS7Q96B45 105 aa9.36□□□□□ -0.91
HDAC6-230ENST00000488543 ALKBH7Q9BT30 221 aaPredicted RBP9.36□□□□□ -0.91
HDAC6-230ENST00000488543 TRBV19A0A075B6N1 114 aa9.36□□□□□ -0.91
HDAC6-230ENST00000488543 DNAJC9-AS1A6NH13 148 aa9.36□□□□□ -0.91
HDAC6-230ENST00000488543 IGLV1-40P01703 118 aa9.36□□□□□ -0.91
HDAC6-230ENST00000488543 TEX29Q8N6K0 151 aa9.36□□□□□ -0.91
HDAC6-230ENST00000488543 KLK15Q9H2R5 256 aa9.36□□□□□ -0.91
HDAC6-230ENST00000488543 IGHV3OR16-8A0A075B7F1 116 aa9.35□□□□□ -0.91
HDAC6-230ENST00000488543 CLPSL1A2RUU4 121 aa9.35□□□□□ -0.91
HDAC6-230ENST00000488543 FAM181BA6NEQ2 426 aa9.35□□□□□ -0.91
HDAC6-230ENST00000488543 IGLC3P0DOY3 106 aa9.35□□□□□ -0.91
HDAC6-230ENST00000488543 SRD5A1P18405 259 aa9.35□□□□□ -0.91
HDAC6-230ENST00000488543 OTORQ9NRC9 128 aa9.35□□□□□ -0.91
HDAC6-230ENST00000488543 RABAC1Q9UI14 185 aa9.35□□□□□ -0.91
HDAC6-230ENST00000488543 BMI1P35226 326 aa9.34□□□□□ -0.91
HDAC6-230ENST00000488543 FAM231DQ6ZW35 169 aa9.34□□□□□ -0.91
HDAC6-230ENST00000488543 C5orf17Q8NAS9 161 aa9.34□□□□□ -0.91
HDAC6-230ENST00000488543 OR4F17Q8NGA8 305 aa9.34□□□□□ -0.91
HDAC6-230ENST00000488543 ZNF702PQ9H963 129 aa9.34□□□□□ -0.91
HDAC6-230ENST00000488543 TEP1Q99973 2627 aaKnown RBP9.34□□□□□ -0.91
HDAC6-230ENST00000488543 SERTM2A0A1B0GWG4 89 aa9.34□□□□□ -0.91
HDAC6-230ENST00000488543 DLEU1O43261 78 aa9.34□□□□□ -0.91
HDAC6-230ENST00000488543 HINT1P49773 126 aaPredicted RBP9.34□□□□□ -0.91
HDAC6-230ENST00000488543 SIGLEC15Q6ZMC9 328 aa9.34□□□□□ -0.91
HDAC6-230ENST00000488543 GOLT1AQ6ZVE7 132 aa9.34□□□□□ -0.91
HDAC6-230ENST00000488543 S100A7AQ86SG5 101 aa9.34□□□□□ -0.91
HDAC6-230ENST00000488543 PRNTQ86SH4 94 aa9.34□□□□□ -0.91
HDAC6-230ENST00000488543 RPP21Q9H633 154 aaKnown RBP9.34□□□□□ -0.91
HDAC6-230ENST00000488543 H0Y8G0 127 aa9.33□□□□□ -0.92
HDAC6-230ENST00000488543 TRBV12-3P01733 135 aa9.33□□□□□ -0.92
HDAC6-230ENST00000488543 TCRAP04437 139 aa9.33□□□□□ -0.92
HDAC6-230ENST00000488543 WIPF2Q8TF74 440 aaPredicted RBP9.33□□□□□ -0.92
HDAC6-230ENST00000488543 GPR82Q96P67 336 aa9.33□□□□□ -0.92
HDAC6-230ENST00000488543 KLF12Q9Y4X4 402 aa9.33□□□□□ -0.92
HDAC6-230ENST00000488543 A0A1B0GXF2 115 aa9.33□□□□□ -0.92
HDAC6-230ENST00000488543 HNRNPA3P51991 378 aaKnown RBP9.33□□□□□ -0.92
HDAC6-230ENST00000488543 SRSF2Q01130 221 aaKnown RBP9.33□□□□□ -0.92
HDAC6-230ENST00000488543 ERASQ7Z444 233 aa9.33□□□□□ -0.92
HDAC6-230ENST00000488543 USMG5Q96IX5 58 aa9.33□□□□□ -0.92
HDAC6-230ENST00000488543 MLST8Q9BVC4 326 aa9.33□□□□□ -0.92
HDAC6-230ENST00000488543 PRSS22Q9GZN4 317 aa9.33□□□□□ -0.92
HDAC6-230ENST00000488543 NPFFR1Q9GZQ6 430 aa9.33□□□□□ -0.92
HDAC6-230ENST00000488543 RNF24Q9Y225 148 aa9.33□□□□□ -0.92
HDAC6-230ENST00000488543 SMAD5-AS1Q9Y6J3 95 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 170.8 ms