RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 BORCS7Q96B45 105 aa11.49□□□□□ -0.57
USP4-203ENST00000415188 PGLYRP4Q96LB8 373 aa11.49□□□□□ -0.57
USP4-203ENST00000415188 ATP6V0BQ99437 205 aa11.49□□□□□ -0.57
USP4-203ENST00000415188 VAMP8Q9BV40 100 aa11.49□□□□□ -0.57
USP4-203ENST00000415188 ZMAT5Q9UDW3 170 aaKnown RBP11.49□□□□□ -0.57
USP4-203ENST00000415188 HSBP1O75506 76 aa11.48□□□□□ -0.57
USP4-203ENST00000415188 CT45A10P0DMU9 189 aa11.48□□□□□ -0.57
USP4-203ENST00000415188 KRTDAPP60985 99 aa11.48□□□□□ -0.57
USP4-203ENST00000415188 NIT1Q86X76 327 aa11.48□□□□□ -0.57
USP4-203ENST00000415188 ZNF502Q8TBZ5 544 aa11.48□□□□□ -0.57
USP4-203ENST00000415188 CHCHD1Q96BP2 118 aaKnown RBP11.48□□□□□ -0.57
USP4-203ENST00000415188 ZC2HC1AQ96GY0 325 aa11.48□□□□□ -0.57
USP4-203ENST00000415188 C17orf77Q96MU5 243 aa11.48□□□□□ -0.57
USP4-203ENST00000415188 JMJD8Q96S16 334 aa11.48□□□□□ -0.57
USP4-203ENST00000415188 NDFIP1Q9BT67 221 aa11.48□□□□□ -0.57
USP4-203ENST00000415188 CENPVL3A0A0U1RRI6 287 aa11.47□□□□□ -0.57
USP4-203ENST00000415188 TMEM89A2RUT3 159 aa11.47□□□□□ -0.57
USP4-203ENST00000415188 CHEK1O14757 476 aa11.47□□□□□ -0.57
USP4-203ENST00000415188 SAPCD1Q5SSQ6 148 aa11.47□□□□□ -0.57
USP4-203ENST00000415188 UNQ5815/PRO19632Q6UWF5 114 aa11.47□□□□□ -0.57
USP4-203ENST00000415188 BCL6BQ8N143 479 aaPredicted RBP11.47□□□□□ -0.57
USP4-203ENST00000415188 A0A087X0K7 114 aa11.46□□□□□ -0.57
USP4-203ENST00000415188 A0A1B0GUT8 65 aa11.46□□□□□ -0.57
USP4-203ENST00000415188 OR2T8A6NH00 312 aa11.46□□□□□ -0.57
USP4-203ENST00000415188 SH2D7A6NKC9 451 aaPredicted RBP11.46□□□□□ -0.57
USP4-203ENST00000415188 APOHP02749 345 aaPredicted RBP11.46□□□□□ -0.57
USP4-203ENST00000415188 Q8N976 141 aa11.46□□□□□ -0.57
USP4-203ENST00000415188 SSBP4Q9BWG4 385 aaPredicted RBP11.46□□□□□ -0.57
USP4-203ENST00000415188 S4R3C0 116 aa11.46□□□□□ -0.57
USP4-203ENST00000415188 IGHV3OR16-10A0A075B7F0 116 aa11.45□□□□□ -0.58
USP4-203ENST00000415188 LOC102724200A0A096LPH7 203 aaPredicted RBP11.45□□□□□ -0.58
USP4-203ENST00000415188 ZNF785A8K8V0 405 aa11.45□□□□□ -0.58
USP4-203ENST00000415188 RPS20P60866 119 aaKnown RBP11.45□□□□□ -0.58
USP4-203ENST00000415188 PAX8Q06710 450 aa11.45□□□□□ -0.58
USP4-203ENST00000415188 DUX5Q96PT3 197 aa11.45□□□□□ -0.58
USP4-203ENST00000415188 MIEN1Q9BRT3 115 aa11.45□□□□□ -0.58
USP4-203ENST00000415188 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.44□□□□□ -0.58
USP4-203ENST00000415188 TRBV7-1A0A0A6YYK4 115 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 ATP6V0E1O15342 81 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 C3orf79P0CE67 100 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 IGHV4-38-2P0DP08 117 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 CRIP2P52943 208 aaPredicted RBP11.44□□□□□ -0.58
USP4-203ENST00000415188 RHOGP84095 191 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 PMCHL1Q16048 86 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 C15orf32Q32M92 178 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 RNASEKQ6P5S7 137 aaKnown RBP11.44□□□□□ -0.58
USP4-203ENST00000415188 EEF1AKMT3Q96AZ1 226 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 MOB4Q9Y3A3 225 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 M0QZK8 103 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 M0R143 59 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 M0R2Z0 102 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 M0R3E3 92 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 CD33P20138 364 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 NTF3P20783 257 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 ECSCRQ19T08 205 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 C3orf56Q8N813 242 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 C5orf56Q8N8D9 126 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 RNF114Q9Y508 228 aa11.44□□□□□ -0.58
USP4-203ENST00000415188 FAM181BA6NEQ2 426 aa11.43□□□□□ -0.58
USP4-203ENST00000415188 DNAJC9-AS1A6NH13 148 aa11.43□□□□□ -0.58
USP4-203ENST00000415188 IGHV3-23P01764 117 aa11.43□□□□□ -0.58
USP4-203ENST00000415188 FAM19A2Q8N3H0 131 aa11.43□□□□□ -0.58
USP4-203ENST00000415188 SLC50A1Q9BRV3 221 aa11.43□□□□□ -0.58
USP4-203ENST00000415188 ZFAND3Q9H8U3 227 aa11.43□□□□□ -0.58
USP4-203ENST00000415188 IGHV1-69DA0A0B4J2H0 117 aa11.42□□□□□ -0.58
USP4-203ENST00000415188 C20orf202A1L168 122 aa11.42□□□□□ -0.58
USP4-203ENST00000415188 RBAKDNA6NC62 111 aa11.42□□□□□ -0.58
USP4-203ENST00000415188 IGHV1-69P01742 117 aa11.42□□□□□ -0.58
USP4-203ENST00000415188 OR5AL1P0C617 328 aa11.42□□□□□ -0.58
USP4-203ENST00000415188 GPR183P32249 361 aa11.42□□□□□ -0.58
USP4-203ENST00000415188 BMI1P35226 326 aa11.42□□□□□ -0.58
USP4-203ENST00000415188 RELQ04864 619 aaPredicted RBP11.42□□□□□ -0.58
USP4-203ENST00000415188 PIP4P2Q8N4L2 257 aa11.42□□□□□ -0.58
USP4-203ENST00000415188 PAM16Q9Y3D7 125 aa11.42□□□□□ -0.58
USP4-203ENST00000415188 TRAV40A0A0B4J280 105 aa11.41□□□□□ -0.58
USP4-203ENST00000415188 TMEM189A5PLL7 270 aa11.41□□□□□ -0.58
USP4-203ENST00000415188 FAM223BA6NKX1 122 aa11.41□□□□□ -0.58
USP4-203ENST00000415188 BTF3P20290 206 aaKnown RBP11.41□□□□□ -0.58
USP4-203ENST00000415188 CTRLP40313 264 aa11.41□□□□□ -0.58
USP4-203ENST00000415188 CRIP1P50238 77 aa11.41□□□□□ -0.58
USP4-203ENST00000415188 ZNF493Q6ZR52 646 aa11.41□□□□□ -0.58
USP4-203ENST00000415188 FAM223AQ8IWN6 122 aa11.41□□□□□ -0.58
USP4-203ENST00000415188 KLHDC1Q8N7A1 406 aa11.41□□□□□ -0.58
USP4-203ENST00000415188 LINC00469Q8N7U9 141 aa11.41□□□□□ -0.58
USP4-203ENST00000415188 MRPL53Q96EL3 112 aaKnown RBP11.41□□□□□ -0.58
USP4-203ENST00000415188 PRR25Q96S07 402 aa11.41□□□□□ -0.58
USP4-203ENST00000415188 MEGF9Q9H1U4 602 aa11.41□□□□□ -0.58
USP4-203ENST00000415188 SMAD5-AS1Q9Y6J3 95 aa11.41□□□□□ -0.58
USP4-203ENST00000415188 SH2D1AO60880 128 aa11.4□□□□□ -0.58
USP4-203ENST00000415188 SSTP61278 116 aa11.4□□□□□ -0.58
USP4-203ENST00000415188 C8orf49Q96NF6 230 aa11.4□□□□□ -0.58
USP4-203ENST00000415188 BUB3O43684 328 aa11.39□□□□□ -0.59
USP4-203ENST00000415188 BRI3O95415 125 aa11.39□□□□□ -0.59
USP4-203ENST00000415188 CLEC3BP05452 202 aa11.39□□□□□ -0.59
USP4-203ENST00000415188 ARMS2P0C7Q2 107 aa11.39□□□□□ -0.59
USP4-203ENST00000415188 LINC00614P0C842 121 aa11.39□□□□□ -0.59
USP4-203ENST00000415188 SPATA45Q537H7 98 aa11.39□□□□□ -0.59
USP4-203ENST00000415188 C19orf54Q5BKX5 351 aa11.39□□□□□ -0.59
USP4-203ENST00000415188 URB1-AS1Q96HZ7 61 aa11.39□□□□□ -0.59
USP4-203ENST00000415188 CCDC140Q96MF4 163 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms