RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 FAM74A1Q5RGS3 127 aa5.09□□□□□ -1.6
LIMA1-202ENST00000394943 SBSPONQ8IVN8 264 aa5.09□□□□□ -1.6
LIMA1-202ENST00000394943 TVP23CQ96ET8 276 aa5.09□□□□□ -1.6
LIMA1-202ENST00000394943 AGPAT4-IT1Q9H0P7 198 aa5.09□□□□□ -1.6
LIMA1-202ENST00000394943 AAMDCQ9H7C9 122 aa5.09□□□□□ -1.6
LIMA1-202ENST00000394943 JMJD1CQ15652 2540 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 C9JCJ5 164 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 PDE6DO43924 150 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 IFNA7P01567 189 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 HLA-DMBP28068 263 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 CNN1P51911 297 aaKnown RBP5.08□□□□□ -1.6
LIMA1-202ENST00000394943 NKX2-5P52952 324 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-202ENST00000394943 CCL20P78556 96 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 C1orf158Q8N1D5 194 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 Q8NAQ8 132 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 FAM210AQ96ND0 272 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 SPATA25Q9BR10 227 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 ZNF688P0C7X2 276 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 BCL2P10415 239 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 ZNF138P52744 262 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 RNF182Q8N6D2 247 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 CYB561D1Q8N8Q1 229 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 WFDC10AQ9H1F0 79 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 EDA2RQ9HAV5 297 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 ZFP30Q9Y2G7 519 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 IGHV3OR16-13A0A075B7E8 117 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 IGHV3-74A0A0B4J1X5 117 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 RBMY1A1P0DJD3 496 aaKnown RBP5.08□□□□□ -1.6
LIMA1-202ENST00000394943 RBMY1CP0DJD4 496 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 ICAM4Q14773 271 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 RBMY1FQ15415 496 aaKnown RBP5.08□□□□□ -1.6
LIMA1-202ENST00000394943 GUCA2BQ16661 112 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 EXOC3-AS1Q8N2X6 119 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 UBQLN2Q9UHD9 624 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 VAX2Q9UIW0 290 aa5.08□□□□□ -1.6
LIMA1-202ENST00000394943 RAB19A4D1S5 217 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 PEX7O00628 323 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 OR7C2O60412 319 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 IGLV2-8P01709 118 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 MED14OSP0DP75 135 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 EBLN2Q6P2I7 272 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 LINC00862A6NCI5 91 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 MIFP14174 115 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 CDKN1BP46527 198 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 DEFA6Q01524 100 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 ZNF674Q2M3X9 581 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 IBA57Q5T440 356 aaKnown RBP5.07□□□□□ -1.6
LIMA1-202ENST00000394943 FAM213BQ8TBF2 198 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 MRAPQ8TCY5 172 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 TMPRSS5Q9H3S3 457 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 KNCNA6PVL3 124 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 TEX46H3BTG2 121 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 ZNF124Q15973 351 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 C10orf91Q5T1B1 145 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 Q86TA4 180 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 STHQ8IWL8 128 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 OR10J6PQ8NGY7 276 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 KRTAP3-3Q9BYR6 98 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 KRTAP3-2Q9BYR7 98 aa5.07□□□□□ -1.6
LIMA1-202ENST00000394943 TMEM189A5PLL7 270 aa5.06□□□□□ -1.6
LIMA1-202ENST00000394943 PGPA6NDG6 321 aa5.06□□□□□ -1.6
LIMA1-202ENST00000394943 TMEM183AQ8IXX5 376 aa5.06□□□□□ -1.6
LIMA1-202ENST00000394943 GBGT1Q8N5D6 347 aa5.06□□□□□ -1.6
LIMA1-202ENST00000394943 C11orf72Q8NBR9 251 aa5.06□□□□□ -1.6
LIMA1-202ENST00000394943 ZNF738Q8NE65 137 aa5.06□□□□□ -1.6
LIMA1-202ENST00000394943 VGLL1Q99990 258 aa5.06□□□□□ -1.6
LIMA1-202ENST00000394943 NUTF2P61970 127 aaKnown RBP5.06□□□□□ -1.6
LIMA1-202ENST00000394943 MEF2BQ02080 365 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-202ENST00000394943 SAPCD1Q5SSQ6 148 aa5.06□□□□□ -1.6
LIMA1-202ENST00000394943 SCRT2Q9NQ03 307 aa5.06□□□□□ -1.6
LIMA1-202ENST00000394943 TEX48A0A1B0GUV7 120 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 C19orf71A6NCJ1 209 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 M0R3E3 92 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 NXPH4O95158 308 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 RNASE8Q8TDE3 154 aaKnown RBP5.05□□□□□ -1.6
LIMA1-202ENST00000394943 IFNA1P01562 189 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 DAZ2Q13117 558 aaKnown RBP5.05□□□□□ -1.6
LIMA1-202ENST00000394943 LINC01559Q495D7 138 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 PRR9Q5T870 116 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 DMRTA1Q5VZB9 504 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 UQCC3Q6UW78 93 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 FAM231DQ6ZW35 169 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 SFT2D1Q8WV19 159 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 VPS13DQ5THJ4 4388 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 COL7A1Q02388 2944 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 C7orf71A4D174 169 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 RBFOX3A6NFN3 312 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 CSN1S1P47710 185 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 FAM74A3Q4VXF1 159 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 ACTL10Q5JWF8 245 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 ALKAL2Q6UX46 152 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 PYGO2Q9BRQ0 406 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 PSG8Q9UQ74 426 aa5.05□□□□□ -1.6
LIMA1-202ENST00000394943 INSP01308 110 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 SRP19P09132 144 aaKnown RBP5.04□□□□□ -1.6
LIMA1-202ENST00000394943 ATP5G3P48201 142 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 HIST1H1AQ02539 215 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-202ENST00000394943 GFI1BQ5VTD9 330 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 ZNF493Q6ZR52 646 aa5.04□□□□□ -1.6
LIMA1-202ENST00000394943 IQCF2Q8IXL9 164 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms