RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 COX8CQ7Z4L0 72 aa12.75□□□□□ -0.37
SDC4-201ENST00000372733 S100A7AQ86SG5 101 aa12.75□□□□□ -0.37
SDC4-201ENST00000372733 OR2K2Q8NGT1 345 aa12.75□□□□□ -0.37
SDC4-201ENST00000372733 IGHG4P01861 327 aa12.75□□□□□ -0.37
SDC4-201ENST00000372733 EVI2AP22794 236 aa12.75□□□□□ -0.37
SDC4-201ENST00000372733 CSTL1Q9H114 145 aa12.75□□□□□ -0.37
SDC4-201ENST00000372733 SMAD5-AS1Q9Y6J3 95 aa12.75□□□□□ -0.37
SDC4-201ENST00000372733 IGKV2D-26A0A0A0MRZ7 120 aa12.75□□□□□ -0.37
SDC4-201ENST00000372733 ORM1P02763 201 aa12.75□□□□□ -0.37
SDC4-201ENST00000372733 NPBQ8NG41 125 aa12.75□□□□□ -0.37
SDC4-201ENST00000372733 ARPC1AQ92747 370 aa12.75□□□□□ -0.37
SDC4-201ENST00000372733 SIVA1O15304 175 aa12.74□□□□□ -0.37
SDC4-201ENST00000372733 MAP1LC3AQ9H492 121 aa12.74□□□□□ -0.37
SDC4-201ENST00000372733 GATA1P15976 413 aaPredicted RBP12.74□□□□□ -0.37
SDC4-201ENST00000372733 PPIFP30405 207 aaKnown RBP12.74□□□□□ -0.37
SDC4-201ENST00000372733 LEPP41159 167 aa12.74□□□□□ -0.37
SDC4-201ENST00000372733 ZNF672Q499Z4 452 aaPredicted RBP12.74□□□□□ -0.37
SDC4-201ENST00000372733 BMI1P35226 326 aa12.73□□□□□ -0.37
SDC4-201ENST00000372733 ERCC8Q13216 396 aa12.73□□□□□ -0.37
SDC4-201ENST00000372733 LINC01560Q8TB33 94 aa12.73□□□□□ -0.37
SDC4-201ENST00000372733 SPCS1Q9Y6A9 102 aa12.73□□□□□ -0.37
SDC4-201ENST00000372733 A0A1W2PPM0 123 aa12.73□□□□□ -0.37
SDC4-201ENST00000372733 ODF1Q14990 250 aa12.73□□□□□ -0.37
SDC4-201ENST00000372733 ZNF48Q96MX3 618 aaPredicted RBP12.73□□□□□ -0.37
SDC4-201ENST00000372733 COL25A1Q9BXS0 654 aaPredicted RBP12.73□□□□□ -0.37
SDC4-201ENST00000372733 NCBP2LA6PVI3 153 aaKnown RBP12.72□□□□□ -0.37
SDC4-201ENST00000372733 LY6G5BQ8NDX9 201 aa12.72□□□□□ -0.37
SDC4-201ENST00000372733 PSMG3-AS1Q96PY0 264 aa12.72□□□□□ -0.37
SDC4-201ENST00000372733 GCSHP23434 173 aa12.72□□□□□ -0.37
SDC4-201ENST00000372733 DYNAPQ8N1N2 210 aa12.72□□□□□ -0.37
SDC4-201ENST00000372733 OR11H6Q8NGC7 330 aa12.72□□□□□ -0.37
SDC4-201ENST00000372733 MUC6Q6W4X9 2439 aa12.72□□□□□ -0.37
SDC4-201ENST00000372733 PRAC2D3DTV9 90 aa12.71□□□□□ -0.37
SDC4-201ENST00000372733 TNFRSF6BO95407 300 aa12.71□□□□□ -0.37
SDC4-201ENST00000372733 FXYD2P54710 66 aa12.71□□□□□ -0.37
SDC4-201ENST00000372733 ABCA4P78363 2273 aa12.71□□□□□ -0.37
SDC4-201ENST00000372733 CTSGP08311 255 aa12.71□□□□□ -0.38
SDC4-201ENST00000372733 CEACAM3P40198 252 aa12.7□□□□□ -0.38
SDC4-201ENST00000372733 ZNF562Q6V9R5 426 aa12.7□□□□□ -0.38
SDC4-201ENST00000372733 FBLL1A6NHQ2 334 aaKnown RBP12.7□□□□□ -0.38
SDC4-201ENST00000372733 K7ERJ3 54 aa12.7□□□□□ -0.38
SDC4-201ENST00000372733 FCER1GP30273 86 aa12.7□□□□□ -0.38
SDC4-201ENST00000372733 TTC9CQ8N5M4 171 aa12.7□□□□□ -0.38
SDC4-201ENST00000372733 RNF182Q8N6D2 247 aa12.7□□□□□ -0.38
SDC4-201ENST00000372733 PRSS1P07477 247 aa12.69□□□□□ -0.38
SDC4-201ENST00000372733 GRNP28799 593 aaKnown RBP12.69□□□□□ -0.38
SDC4-201ENST00000372733 CNFNQ9BYD5 112 aa12.69□□□□□ -0.38
SDC4-201ENST00000372733 HHLA3Q9XRX5 114 aa12.69□□□□□ -0.38
SDC4-201ENST00000372733 ANKHD1Q8IWZ3 2542 aaKnown RBP12.69□□□□□ -0.38
SDC4-201ENST00000372733 ODF3BA8MYP8 253 aa12.69□□□□□ -0.38
SDC4-201ENST00000372733 G3V4G9 280 aa12.69□□□□□ -0.38
SDC4-201ENST00000372733 IL17RELQ6ZVW7 336 aa12.69□□□□□ -0.38
SDC4-201ENST00000372733 NEGR1Q7Z3B1 354 aa12.69□□□□□ -0.38
SDC4-201ENST00000372733 TMEM158Q8WZ71 300 aa12.69□□□□□ -0.38
SDC4-201ENST00000372733 FOXC2Q99958 501 aa12.69□□□□□ -0.38
SDC4-201ENST00000372733 CHAC1Q9BUX1 264 aa12.69□□□□□ -0.38
SDC4-201ENST00000372733 NPFFR1Q9GZQ6 430 aa12.69□□□□□ -0.38
SDC4-201ENST00000372733 GTSCR1Q86UQ5 136 aa12.68□□□□□ -0.38
SDC4-201ENST00000372733 LINC01546A6NGU7 62 aa12.68□□□□□ -0.38
SDC4-201ENST00000372733 FABP5P3A8MUU1 101 aa12.68□□□□□ -0.38
SDC4-201ENST00000372733 FABP2P12104 132 aa12.68□□□□□ -0.38
SDC4-201ENST00000372733 OR5A1Q8NGJ0 315 aa12.68□□□□□ -0.38
SDC4-201ENST00000372733 ZMAT4Q9H898 229 aa12.68□□□□□ -0.38
SDC4-201ENST00000372733 NXT2Q9NPJ8 142 aaKnown RBP12.68□□□□□ -0.38
SDC4-201ENST00000372733 WNK2Q9Y3S1 2297 aa12.68□□□□□ -0.38
SDC4-201ENST00000372733 IGHV3-66A0A0C4DH42 116 aa12.67□□□□□ -0.38
SDC4-201ENST00000372733 FAM90A27PA6NNH2 459 aa12.67□□□□□ -0.38
SDC4-201ENST00000372733 TRGV3P03979 118 aa12.67□□□□□ -0.38
SDC4-201ENST00000372733 SAMD5Q5TGI4 173 aa12.67□□□□□ -0.38
SDC4-201ENST00000372733 K7EMI3 77 aa12.67□□□□□ -0.38
SDC4-201ENST00000372733 IGKCP01834 107 aa12.67□□□□□ -0.38
SDC4-201ENST00000372733 SMIM13P0DJ93 91 aa12.67□□□□□ -0.38
SDC4-201ENST00000372733 DTX2Q86UW9 622 aa12.67□□□□□ -0.38
SDC4-201ENST00000372733 PIFOQ8TCI5 191 aa12.66□□□□□ -0.38
SDC4-201ENST00000372733 SRSF2Q01130 221 aaKnown RBP12.66□□□□□ -0.38
SDC4-201ENST00000372733 LINC01559Q495D7 138 aa12.66□□□□□ -0.38
SDC4-201ENST00000372733 C11orf21Q9P2W6 132 aa12.66□□□□□ -0.38
SDC4-201ENST00000372733 IGHV3OR16-13A0A075B7E8 117 aa12.65□□□□□ -0.38
SDC4-201ENST00000372733 IGHV3-74A0A0B4J1X5 117 aa12.65□□□□□ -0.38
SDC4-201ENST00000372733 ZC2HC1BQ5TFG8 222 aa12.65□□□□□ -0.38
SDC4-201ENST00000372733 TRBV25-1A0A075B6N4 114 aa12.65□□□□□ -0.38
SDC4-201ENST00000372733 HIGD1BQ9P298 99 aa12.65□□□□□ -0.38
SDC4-201ENST00000372733 RELNP78509 3460 aa12.65□□□□□ -0.38
SDC4-201ENST00000372733 TLN1Q9Y490 2541 aaKnown RBP12.65□□□□□ -0.39
SDC4-201ENST00000372733 TRAV26-2A0A0B4J265 109 aa12.64□□□□□ -0.39
SDC4-201ENST00000372733 IGKV3D-20A0A0C4DH25 116 aa12.64□□□□□ -0.39
SDC4-201ENST00000372733 TMEM8BA6NDV4 472 aa12.64□□□□□ -0.39
SDC4-201ENST00000372733 DPM2O94777 84 aa12.64□□□□□ -0.39
SDC4-201ENST00000372733 PRTN3P24158 256 aa12.64□□□□□ -0.39
SDC4-201ENST00000372733 VMO1Q7Z5L0 202 aa12.64□□□□□ -0.39
SDC4-201ENST00000372733 CEP295Q9C0D2 2601 aa12.64□□□□□ -0.39
SDC4-201ENST00000372733 IGHV7-81A0A0B4J1V7 117 aa12.64□□□□□ -0.39
SDC4-201ENST00000372733 Q8N6K4 173 aa12.64□□□□□ -0.39
SDC4-201ENST00000372733 NHP2Q9NX24 153 aaKnown RBP12.64□□□□□ -0.39
SDC4-201ENST00000372733 IGLV2-18A0A075B6J9 118 aa12.63□□□□□ -0.39
SDC4-201ENST00000372733 M0R1W7 72 aa12.63□□□□□ -0.39
SDC4-201ENST00000372733 SCGB2A1O75556 95 aa12.63□□□□□ -0.39
SDC4-201ENST00000372733 TMEM11P17152 192 aa12.63□□□□□ -0.39
SDC4-201ENST00000372733 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.63□□□□□ -0.39
SDC4-201ENST00000372733 Q8N8P6 123 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms