RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TMEM243Q9BU79 118 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 DOCK11Q5JSL3 2073 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 CDKN1BP46527 198 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 IGLV3-9A0A075B6K5 115 aa15.33■□□□□ 0.05
UPF1-201ENST00000262803 TRBV19A0A075B6N1 114 aa15.33■□□□□ 0.05
UPF1-201ENST00000262803 A0A087X0K7 114 aa15.33■□□□□ 0.05
UPF1-201ENST00000262803 AZU1P20160 251 aa15.33■□□□□ 0.05
UPF1-201ENST00000262803 SSBP2P81877 361 aaPredicted RBP15.33■□□□□ 0.05
UPF1-201ENST00000262803 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.33■□□□□ 0.04
UPF1-201ENST00000262803 YLPM1P49750 1951 aaKnown RBP15.33■□□□□ 0.04
UPF1-201ENST00000262803 A0A1B0GUS0 222 aa15.33■□□□□ 0.04
UPF1-201ENST00000262803 WDR86Q86TI4 376 aa15.33■□□□□ 0.04
UPF1-201ENST00000262803 SPAG8Q99932 426 aaPredicted RBP15.33■□□□□ 0.04
UPF1-201ENST00000262803 LOXP28300 417 aaPredicted RBP15.32■□□□□ 0.04
UPF1-201ENST00000262803 HOXD3P31249 432 aaPredicted RBP15.32■□□□□ 0.04
UPF1-201ENST00000262803 RPL32P62910 135 aaKnown RBP15.32■□□□□ 0.04
UPF1-201ENST00000262803 DEFB104AQ8WTQ1 72 aa15.32■□□□□ 0.04
UPF1-201ENST00000262803 INAFM2P0DMQ5 153 aa15.32■□□□□ 0.04
UPF1-201ENST00000262803 ESDP10768 282 aa15.32■□□□□ 0.04
UPF1-201ENST00000262803 GAGE2BQ13066 116 aa15.32■□□□□ 0.04
UPF1-201ENST00000262803 ATP6V0BQ99437 205 aa15.32■□□□□ 0.04
UPF1-201ENST00000262803 ZNF503-AS2A6NEH8 195 aa15.32■□□□□ 0.04
UPF1-201ENST00000262803 SMKR1H3BMG3 65 aa15.32■□□□□ 0.04
UPF1-201ENST00000262803 HELZP42694 1942 aaKnown RBP15.31■□□□□ 0.04
UPF1-201ENST00000262803 A0A087WWL8 130 aa15.31■□□□□ 0.04
UPF1-201ENST00000262803 H3BRN7 92 aa15.31■□□□□ 0.04
UPF1-201ENST00000262803 DOCK9Q9BZ29 2069 aa15.31■□□□□ 0.04
UPF1-201ENST00000262803 Q0VG73 95 aa15.31■□□□□ 0.04
UPF1-201ENST00000262803 ZNF726P1Q15940 193 aa15.31■□□□□ 0.04
UPF1-201ENST00000262803 IGF2-ASQ6U949 168 aa15.31■□□□□ 0.04
UPF1-201ENST00000262803 MGAMO43451 1857 aa15.31■□□□□ 0.04
UPF1-201ENST00000262803 NDUFS6O75380 124 aaKnown RBP15.31■□□□□ 0.04
UPF1-201ENST00000262803 EDA2RQ9HAV5 297 aa15.31■□□□□ 0.04
UPF1-201ENST00000262803 MED13LQ71F56 2210 aa15.31■□□□□ 0.04
UPF1-201ENST00000262803 TCTEX1D4Q5JR98 221 aa15.3■□□□□ 0.04
UPF1-201ENST00000262803 FAM231DQ6ZW35 169 aa15.3■□□□□ 0.04
UPF1-201ENST00000262803 PIP4P1Q86T03 277 aa15.3■□□□□ 0.04
UPF1-201ENST00000262803 PMVKQ15126 192 aa15.3■□□□□ 0.04
UPF1-201ENST00000262803 ZC2HC1BQ5TFG8 222 aa15.3■□□□□ 0.04
UPF1-201ENST00000262803 CYYR1Q96J86 154 aa15.3■□□□□ 0.04
UPF1-201ENST00000262803 SNHG12Q9BXW3 62 aa15.3■□□□□ 0.04
UPF1-201ENST00000262803 XCL2Q9UBD3 114 aa15.3■□□□□ 0.04
UPF1-201ENST00000262803 MRPL53Q96EL3 112 aaKnown RBP15.3■□□□□ 0.04
UPF1-201ENST00000262803 RBMY1FQ15415 496 aaKnown RBP15.29■□□□□ 0.04
UPF1-201ENST00000262803 ZFAND6Q6FIF0 208 aa15.29■□□□□ 0.04
UPF1-201ENST00000262803 RIPPLY3P57055 190 aa15.29■□□□□ 0.04
UPF1-201ENST00000262803 C8orf86Q6ZUL3 223 aa15.29■□□□□ 0.04
UPF1-201ENST00000262803 TSSC4Q9Y5U2 329 aaPredicted RBP15.29■□□□□ 0.04
UPF1-201ENST00000262803 GAGE12JA6NER3 117 aa15.29■□□□□ 0.04
UPF1-201ENST00000262803 GAGE1Q13065 139 aa15.29■□□□□ 0.04
UPF1-201ENST00000262803 GAGE4Q13068 117 aa15.29■□□□□ 0.04
UPF1-201ENST00000262803 GAGE5Q13069 117 aa15.29■□□□□ 0.04
UPF1-201ENST00000262803 FAM104BQ5XKR9 115 aa15.29■□□□□ 0.04
UPF1-201ENST00000262803 WIPF3A6NGB9 483 aa15.29■□□□□ 0.04
UPF1-201ENST00000262803 THAP8Q8NA92 274 aa15.29■□□□□ 0.04
UPF1-201ENST00000262803 IGHV7-4-1A0A0J9YVY3 117 aa15.28■□□□□ 0.04
UPF1-201ENST00000262803 BOD1L2Q8IYS8 172 aa15.28■□□□□ 0.04
UPF1-201ENST00000262803 C17orf58Q2M2W7 97 aa15.28■□□□□ 0.04
UPF1-201ENST00000262803 VWC2Q2TAL6 325 aa15.28■□□□□ 0.04
UPF1-201ENST00000262803 VOPP1Q96AW1 172 aa15.28■□□□□ 0.04
UPF1-201ENST00000262803 TMEM126AQ9H061 195 aa15.28■□□□□ 0.04
UPF1-201ENST00000262803 ARFGEF3Q5TH69 2177 aa15.28■□□□□ 0.04
UPF1-201ENST00000262803 PRR30Q53SZ7 412 aaPredicted RBP15.28■□□□□ 0.04
UPF1-201ENST00000262803 C18orf32Q8TCD1 76 aa15.27■□□□□ 0.04
UPF1-201ENST00000262803 TP53TG1Q9Y2A0 90 aa15.27■□□□□ 0.04
UPF1-201ENST00000262803 DUX4L9Q6RFH8 374 aaPredicted RBP15.27■□□□□ 0.03
UPF1-201ENST00000262803 RNF152Q8N8N0 203 aa15.27■□□□□ 0.03
UPF1-201ENST00000262803 DKK1O94907 266 aa15.27■□□□□ 0.03
UPF1-201ENST00000262803 C10orf91Q5T1B1 145 aa15.27■□□□□ 0.03
UPF1-201ENST00000262803 FOXI2Q6ZQN5 318 aa15.27■□□□□ 0.03
UPF1-201ENST00000262803 OR11H6Q8NGC7 330 aa15.26■□□□□ 0.03
UPF1-201ENST00000262803 IGLV3-1P01715 115 aa15.26■□□□□ 0.03
UPF1-201ENST00000262803 HIST1H4AP62805 103 aaKnown RBP15.26■□□□□ 0.03
UPF1-201ENST00000262803 SPINK13Q1W4C9 94 aa15.26■□□□□ 0.03
UPF1-201ENST00000262803 KLF2Q9Y5W3 355 aaPredicted RBP15.26■□□□□ 0.03
UPF1-201ENST00000262803 C2orf66Q6UXQ4 117 aa15.26■□□□□ 0.03
UPF1-201ENST00000262803 POLR3KQ9Y2Y1 108 aaPredicted RBP15.26■□□□□ 0.03
UPF1-201ENST00000262803 SOCS3O14543 225 aa15.25■□□□□ 0.03
UPF1-201ENST00000262803 POU2AF1Q16633 256 aa15.25■□□□□ 0.03
UPF1-201ENST00000262803 LENEPQ9Y5L5 61 aa15.25■□□□□ 0.03
UPF1-201ENST00000262803 K7EM74 188 aa15.25■□□□□ 0.03
UPF1-201ENST00000262803 VPREB3Q9UKI3 123 aa15.25■□□□□ 0.03
UPF1-201ENST00000262803 A8MWP6 167 aa15.25■□□□□ 0.03
UPF1-201ENST00000262803 NPC2P61916 151 aa15.25■□□□□ 0.03
UPF1-201ENST00000262803 PYGO2Q9BRQ0 406 aa15.25■□□□□ 0.03
UPF1-201ENST00000262803 TRBV20-1A0A075B6N2 111 aa15.25■□□□□ 0.03
UPF1-201ENST00000262803 ZNF134P52741 427 aa15.25■□□□□ 0.03
UPF1-201ENST00000262803 K7EMI3 77 aa15.24■□□□□ 0.03
UPF1-201ENST00000262803 SH2D6Q7Z4S9 175 aa15.24■□□□□ 0.03
UPF1-201ENST00000262803 PLXNA2O75051 1894 aa15.24■□□□□ 0.03
UPF1-201ENST00000262803 TICRRQ7Z2Z1 1910 aa15.24■□□□□ 0.03
UPF1-201ENST00000262803 CD5LO43866 347 aa15.24■□□□□ 0.03
UPF1-201ENST00000262803 HERVK_113P63121 156 aa15.24■□□□□ 0.03
UPF1-201ENST00000262803 RHOHQ15669 191 aa15.24■□□□□ 0.03
UPF1-201ENST00000262803 ZNF48Q96MX3 618 aaPredicted RBP15.24■□□□□ 0.03
UPF1-201ENST00000262803 C20orf78Q9BR46 151 aa15.24■□□□□ 0.03
UPF1-201ENST00000262803 TMEM213A2RRL7 107 aa15.24■□□□□ 0.03
UPF1-201ENST00000262803 C15orf65H3BRN8 121 aa15.24■□□□□ 0.03
UPF1-201ENST00000262803 ANAPC1Q9H1A4 1944 aa15.23■□□□□ 0.03
UPF1-201ENST00000262803 PRR25Q96S07 402 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms