RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 RPP25LQ8N5L8 163 aaKnown RBP2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 ARL6IP6Q8N6S5 226 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 OR2K2Q8NGT1 345 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 HIST1H4GQ99525 98 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 VPS25Q9BRG1 176 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 MARVELD1Q9BSK0 173 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 PROK2Q9HC23 129 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 NPDC1Q9NQX5 325 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 ZNRD1Q9P1U0 126 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 ZNF319Q9P2F9 582 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 FBLN5Q9UBX5 448 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 COX11Q9Y6N1 276 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 Q6ZR03 302 aa2.34□□□□□ -2.04
SMCHD1-203ENST00000577880 GPHB5Q86YW7 130 aa2.34□□□□□ -2.04
SMCHD1-203ENST00000577880 SPRY4Q9C004 299 aa2.34□□□□□ -2.04
SMCHD1-203ENST00000577880 TMEM160Q9NX00 188 aa2.34□□□□□ -2.04
SMCHD1-203ENST00000577880 EYSQ5T1H1 3165 aa2.34□□□□□ -2.04
SMCHD1-203ENST00000577880 ANKRD36A6QL64 1941 aa2.34□□□□□ -2.04
SMCHD1-203ENST00000577880 GREB1Q4ZG55 1949 aa2.34□□□□□ -2.04
SMCHD1-203ENST00000577880 RALGAPA2Q2PPJ7 1873 aa2.34□□□□□ -2.04
SMCHD1-203ENST00000577880 PCSK5Q92824 1860 aa2.34□□□□□ -2.04
SMCHD1-203ENST00000577880 COL6A3P12111 3177 aa2.34□□□□□ -2.04
SMCHD1-203ENST00000577880 SIP14410 1827 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 IGKV2-40A0A087WW87 121 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 IGKV1D-13A0A0B4J2D9 117 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 IGKV1-12A0A0C4DH73 117 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 DKK1O94907 266 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 IGKV2D-40P01614 121 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 IGKV1-13P0DP09 117 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 IGLL1P15814 213 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 CLLU1Q5K131 121 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 OR11H6Q8NGC7 330 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 ZNRF2Q8NHG8 242 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 TSKUQ8WUA8 353 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 ST6GAL2Q96JF0 529 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 SCRT1Q9BWW7 348 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 NOP10Q9NPE3 64 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 MYO9AB2RTY4 2548 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 DOCK4Q8N1I0 1966 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 LCTP09848 1927 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 A0A087WWC5 75 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 C5orf63A6NC05 138 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 H3BQ15 152 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 DANCRP0C864 163 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 PYYP10082 97 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 PLNP26678 52 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 TFF3Q07654 80 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 ODF1Q14990 250 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 Q6P435 159 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 C4orf3Q8WVX3 66 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 C16orf74Q96GX8 76 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 C8orf49Q96NF6 230 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 PYGO2Q9BRQ0 406 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 TRBV6-6A0A0A6YYG2 114 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 IGHV3-16A0A0C4DH30 117 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 A0A0U1RRA0 63 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 IGKV1-5P01602 117 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 TIRAPP58753 221 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 GAGE6Q13070 117 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 NEGR1Q7Z3B1 354 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 TRPT1Q86TN4 253 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 C18orf15Q96N68 181 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 ZSWIM8A7E2V4 1837 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 A0A1W2PNU3 283 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 C7orf77A4D0Y5 90 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 C15orf62A8K5M9 175 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 ETV2O00321 342 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 GYPEP15421 78 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 IGFBP3P17936 291 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 CBLN1P23435 193 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 NTF4P34130 210 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 PDE6HQ13956 83 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 ZNF345Q14585 488 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 PET117Q6UWS5 81 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 NFE4Q86UQ8 179 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 FAM24BQ8N5W8 94 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 RNF152Q8N8N0 203 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 RNF138Q8WVD3 245 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 ZNF414Q96IQ9 312 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 KLK9Q9UKQ9 250 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 ELF5Q9UKW6 265 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 PDCD11Q14690 1871 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 PTPRFP10586 1907 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 RLFQ13129 1914 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 DSCAMO60469 2012 aa2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 CHD3Q12873 2000 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-203ENST00000577880 A0A1W2PPI3 338 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 CXCL2P19875 107 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 OTX1P32242 354 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 TCTAP57738 103 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 FAM3BP58499 235 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 GNG5P63218 68 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 AWAT1Q58HT5 328 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 GFI1BQ5VTD9 330 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 BCL6BQ8N143 479 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 C7orf33Q8WU49 177 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 MBD6Q96DN6 1003 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 WDR83OSQ9Y284 106 aa2.32□□□□□ -2.04
SMCHD1-203ENST00000577880 UNC80Q8N2C7 3258 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms