RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PKHD1P08F94 4074 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 TRAV30A0A087WSZ9 112 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 IGHV3-49A0A0A0MS15 119 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 IGHV7-4-1A0A0J9YVY3 117 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 A0A1B0GU03 582 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 DUXBA0A1W2PPF3 345 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 NUPR2A6NF83 97 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 C15orf62A8K5M9 175 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 F6UZH7 168 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 H7BYZ3 331 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 CHEK1O14757 476 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 EREGO14944 169 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 KRASP01116 189 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 IFNA5P01569 189 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 TYMSP04818 313 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 SCGB1A1P11684 91 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 S100GP29377 79 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 HRH1P35367 487 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 APOC4P55056 127 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 PDZD11Q5EBL8 140 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 LGI3Q8N145 548 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 FRZBQ92765 325 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 PYGO2Q9BRQ0 406 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 RBKSQ9H477 322 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 DNAJC4Q9NNZ3 241 aa4.93□□□□□ -1.62
VPS53-213ENST00000572334 TGIF2-C20orf24A0A0A6YYL0 155 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 C15orf61A6NNL5 157 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 PITX3O75364 302 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 CDS2O95674 445 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 IGHV3-48P01763 117 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 APOHP02749 345 aaPredicted RBP4.92□□□□□ -1.62
VPS53-213ENST00000572334 SNRPCP09234 159 aaKnown RBP4.92□□□□□ -1.62
VPS53-213ENST00000572334 P0C879 139 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 TAS2R30P59541 319 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 HERV-K104P61576 105 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 SUMO1P63165 101 aaKnown RBP4.92□□□□□ -1.62
VPS53-213ENST00000572334 IL15RAQ13261 267 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 IZUMO4Q1ZYL8 232 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 PHLDA2Q53GA4 152 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 FAM162BQ5T6X4 162 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 PVRIGQ6DKI7 326 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 GBGT1Q8N5D6 347 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 LRTM2Q8N967 370 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 ZNF114Q8NC26 417 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 OR2G3Q8NGZ4 309 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 MARCH1Q8TCQ1 289 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 PHLDA1Q8WV24 401 aaPredicted RBP4.92□□□□□ -1.62
VPS53-213ENST00000572334 CIB3Q96Q77 187 aaPredicted RBP4.92□□□□□ -1.62
VPS53-213ENST00000572334 ATG101Q9BSB4 218 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 ALKBH7Q9BT30 221 aaPredicted RBP4.92□□□□□ -1.62
VPS53-213ENST00000572334 RHPN1-AS1Q9BWJ2 59 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 HINT2Q9BX68 163 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 MAGT1Q9H0U3 335 aa4.92□□□□□ -1.62
VPS53-213ENST00000572334 IGHV3OR16-13A0A075B7E8 117 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 IGHV3-74A0A0B4J1X5 117 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 OR4C46A6NHA9 309 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 ZNF727A8MUV8 499 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 C9JQL5 133 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 H0YIZ8 118 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 TMEM250H0YL14 139 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 MT-CO2P00403 227 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 CXCL1P09341 107 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 GIG44P09565 113 aaPredicted RBP4.91□□□□□ -1.62
VPS53-213ENST00000572334 NPSP0C0P6 89 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 GALR1P47211 349 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 NANOS2P60321 138 aaKnown RBP4.91□□□□□ -1.62
VPS53-213ENST00000572334 ERVK-16P61578 105 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 RND3P61587 244 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 RBX1P62877 108 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 SERF2P84101 59 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 PRCDQ00LT1 54 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 PMCHL1Q16048 86 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 Q56UQ5 140 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 ACTL10Q5JWF8 245 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 LGALS9CQ6DKI2 356 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 TEX43Q6ZNM6 134 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 CYP2G1PQ6ZSU1 146 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 LINC01551Q86U37 167 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 TBC1D26Q86UD7 250 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 CMTM1Q8IZ96 169 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 STPG3Q8N7X2 389 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 TMEM116Q8NCL8 245 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 OR4D5Q8NGN0 318 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 OR4X1Q8NH49 305 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 SCGB1C1Q8TD33 95 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 NUDT11Q96G61 164 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 TXNDC17Q9BRA2 123 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 PARD6GQ9BYG4 376 aaPredicted RBP4.91□□□□□ -1.62
VPS53-213ENST00000572334 CSTL1Q9H114 145 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 VSIRQ9H7M9 311 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 ZFAND3Q9H8U3 227 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 SDF2L1Q9HCN8 221 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 MANBALQ9NQG1 85 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 ZNF586Q9NXT0 402 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 MRPL36Q9P0J6 103 aaKnown RBP4.91□□□□□ -1.62
VPS53-213ENST00000572334 PRNDQ9UKY0 176 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 SLC45A2Q9UMX9 530 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 MRPS16Q9Y3D3 137 aaKnown RBP4.91□□□□□ -1.62
VPS53-213ENST00000572334 LSM5Q9Y4Y9 91 aaKnown RBP4.91□□□□□ -1.62
VPS53-213ENST00000572334 URGCP-MRPS24S4R325 110 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms