RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ZNF738Q8NE65 137 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 OR8A1Q8NGG7 326 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 OR2G3Q8NGZ4 309 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 SCGB1C1Q8TD33 95 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 BLNKQ8WV28 456 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 RPUSD4Q96CM3 377 aaKnown RBP6.65□□□□□ -1.34
VPS35-206ENST00000565228 MFFQ9GZY8 342 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 OR51M1Q9H341 326 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 RPRMQ9NS64 109 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 FRAS1Q86XX4 4008 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 CT45A10P0DMU9 189 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 SPP1P10451 314 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 PSG9Q00887 426 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 SPINK13Q1W4C9 94 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 LGALSLQ3ZCW2 172 aaPredicted RBP6.64□□□□□ -1.35
VPS35-206ENST00000565228 FAM122CQ6P4D5 195 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 MORN3Q6PF18 240 aaPredicted RBP6.64□□□□□ -1.35
VPS35-206ENST00000565228 LCN15Q6UWW0 184 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 BAP18Q8IXM2 172 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 KCNRGQ8N5I3 272 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 MUC7Q8TAX7 377 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 RNF141Q8WVD5 230 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 FAM19A4Q96LR4 140 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 RARRES2Q99969 163 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 PSMG3Q9BT73 122 aaPredicted RBP6.64□□□□□ -1.35
VPS35-206ENST00000565228 PAXXQ9BUH6 204 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 MRPL32Q9BYC8 188 aaKnown RBP6.64□□□□□ -1.35
VPS35-206ENST00000565228 CELA1Q9UNI1 258 aa6.64□□□□□ -1.35
VPS35-206ENST00000565228 IGHV4-28A0A0C4DH34 117 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 HMSDA8MTL9 139 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 C17orf112F2Z3M2 114 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 NBEAP1P0C6P0 100 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 M6PRP20645 277 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 FHITP49789 147 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 HIST1H1AQ02539 215 aaPredicted RBP6.63□□□□□ -1.35
VPS35-206ENST00000565228 ICAM4Q14773 271 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 CASC10Q5T4H9 136 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 PRR9Q5T870 116 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 VPS13DQ5THJ4 4388 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 TCTE3Q8IZS6 198 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 OR10G4Q8NGN3 311 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 OR10G9Q8NGN4 311 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 OR10G7Q8NGN6 311 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 IL17DQ8TAD2 202 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 RAB24Q969Q5 203 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 VGLL1Q99990 258 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 SLC50A1Q9BRV3 221 aa6.63□□□□□ -1.35
VPS35-206ENST00000565228 IGKV2-40A0A087WW87 121 aaPredicted RBP6.62□□□□□ -1.35
VPS35-206ENST00000565228 PLAC8L1A1L4L8 177 aa6.62□□□□□ -1.35
VPS35-206ENST00000565228 NPIPB6E9PJ23 425 aa6.62□□□□□ -1.35
VPS35-206ENST00000565228 ZNF253O75346 499 aa6.62□□□□□ -1.35
VPS35-206ENST00000565228 IGKV2D-40P01614 121 aaPredicted RBP6.62□□□□□ -1.35
VPS35-206ENST00000565228 STAG3L2P0CL84 134 aa6.62□□□□□ -1.35
VPS35-206ENST00000565228 STAG3L3P0CL85 134 aa6.62□□□□□ -1.35
VPS35-206ENST00000565228 AZU1P20160 251 aa6.62□□□□□ -1.35
VPS35-206ENST00000565228 NANOS2P60321 138 aaKnown RBP6.62□□□□□ -1.35
VPS35-206ENST00000565228 ZNF266Q14584 549 aa6.62□□□□□ -1.35
VPS35-206ENST00000565228 ACOT6Q3I5F7 207 aaPredicted RBP6.62□□□□□ -1.35
VPS35-206ENST00000565228 EBLN2Q6P2I7 272 aa6.62□□□□□ -1.35
VPS35-206ENST00000565228 INO80EQ8NBZ0 244 aaPredicted RBP6.62□□□□□ -1.35
VPS35-206ENST00000565228 SUN5Q8TC36 379 aa6.62□□□□□ -1.35
VPS35-206ENST00000565228 AGPAT4-IT1Q9H0P7 198 aa6.62□□□□□ -1.35
VPS35-206ENST00000565228 TMPRSS5Q9H3S3 457 aa6.62□□□□□ -1.35
VPS35-206ENST00000565228 DNAH6Q9C0G6 4158 aa6.61□□□□□ -1.35
VPS35-206ENST00000565228 OR7C2O60412 319 aa6.61□□□□□ -1.35
VPS35-206ENST00000565228 ARL14EPLP0DKL9 152 aa6.61□□□□□ -1.35
VPS35-206ENST00000565228 RHOBP62745 196 aa6.61□□□□□ -1.35
VPS35-206ENST00000565228 RANP62826 216 aaKnown RBP6.61□□□□□ -1.35
VPS35-206ENST00000565228 ZNF345Q14585 488 aa6.61□□□□□ -1.35
VPS35-206ENST00000565228 GUK1Q16774 197 aa6.61□□□□□ -1.35
VPS35-206ENST00000565228 SAMD13Q5VXD3 122 aa6.61□□□□□ -1.35
VPS35-206ENST00000565228 TMUB2Q71RG4 321 aa6.61□□□□□ -1.35
VPS35-206ENST00000565228 ZNF767PQ75MW2 155 aa6.61□□□□□ -1.35
VPS35-206ENST00000565228 LRRC20Q8TCA0 184 aa6.61□□□□□ -1.35
VPS35-206ENST00000565228 TVP23CQ96ET8 276 aa6.61□□□□□ -1.35
VPS35-206ENST00000565228 Q9H3A6 140 aa6.61□□□□□ -1.35
VPS35-206ENST00000565228 IGHV3OR16-12A0A075B7B8 117 aa6.6□□□□□ -1.35
VPS35-206ENST00000565228 ZNF705GA8MUZ8 300 aaPredicted RBP6.6□□□□□ -1.35
VPS35-206ENST00000565228 BOLA2-SMG1P6H3BVE0 249 aa6.6□□□□□ -1.35
VPS35-206ENST00000565228 BCL2L11O43521 198 aa6.6□□□□□ -1.35
VPS35-206ENST00000565228 S100A7P31151 101 aa6.6□□□□□ -1.35
VPS35-206ENST00000565228 CDC34P49427 236 aaPredicted RBP6.6□□□□□ -1.35
VPS35-206ENST00000565228 FGF8P55075 233 aaPredicted RBP6.6□□□□□ -1.35
VPS35-206ENST00000565228 GNG5P63218 68 aa6.6□□□□□ -1.35
VPS35-206ENST00000565228 UBE2L3P68036 154 aaKnown RBP6.6□□□□□ -1.35
VPS35-206ENST00000565228 PDE6HQ13956 83 aa6.6□□□□□ -1.35
VPS35-206ENST00000565228 TMEM41BQ5BJD5 291 aa6.6□□□□□ -1.35
VPS35-206ENST00000565228 GFI1BQ5VTD9 330 aa6.6□□□□□ -1.35
VPS35-206ENST00000565228 MRPL53Q96EL3 112 aaKnown RBP6.6□□□□□ -1.35
VPS35-206ENST00000565228 IGF2BP2-AS1Q96M15 143 aa6.6□□□□□ -1.35
VPS35-206ENST00000565228 ARPC5LQ9BPX5 153 aa6.6□□□□□ -1.35
VPS35-206ENST00000565228 C11orf68Q9H3H3 251 aaKnown RBP6.6□□□□□ -1.35
VPS35-206ENST00000565228 KCNIP2Q9NS61 270 aa6.6□□□□□ -1.35
VPS35-206ENST00000565228 C3orf84H3BNL1 204 aa6.59□□□□□ -1.35
VPS35-206ENST00000565228 J3KRW8 73 aa6.59□□□□□ -1.35
VPS35-206ENST00000565228 DUSP14O95147 198 aaKnown RBP6.59□□□□□ -1.35
VPS35-206ENST00000565228 C1QBP02746 253 aa6.59□□□□□ -1.35
VPS35-206ENST00000565228 GCHFRP30047 84 aa6.59□□□□□ -1.35
VPS35-206ENST00000565228 SERF2P84101 59 aa6.59□□□□□ -1.35
VPS35-206ENST00000565228 KHDC3LQ587J8 217 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms